FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9258, 286 aa
  1>>>pF1KE9258 286 - 286 aa - 286 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6979+/-0.000724; mu= 13.6089+/- 0.044
 mean_var=74.0959+/-14.719, 0's: 0 Z-trim(110.0): 9  B-trim: 0 in 0/50
 Lambda= 0.148997
 statistics sampled from 11277 (11282) to 11277 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.347), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS1647.1 RNASEH1 gene_id:246243|Hs108|chr2       ( 286) 1985 435.5 2.1e-122


>>CCDS1647.1 RNASEH1 gene_id:246243|Hs108|chr2            (286 aa)
 initn: 1985 init1: 1985 opt: 1985  Z-score: 2311.0  bits: 435.5 E(32554): 2.1e-122
Smith-Waterman score: 1985; 100.0% identity (100.0% similar) in 286 aa overlap (1-286:1-286)

               10        20        30        40        50        60
pF1KE9 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN
              190       200       210       220       230       240

              250       260       270       280      
pF1KE9 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
              250       260       270       280      




286 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:34:45 2016 done: Mon Nov  7 02:34:45 2016
 Total Scan time:  2.150 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]