FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5302, 277 aa
  1>>>pF1KE5302 277 - 277 aa - 277 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3472+/-0.000298; mu= 15.8809+/- 0.019
 mean_var=73.8348+/-15.076, 0's: 0 Z-trim(117.4): 4  B-trim: 0 in 0/55
 Lambda= 0.149260
 statistics sampled from 29274 (29277) to 29274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.343), width:  16
 Scan time:  5.680

The best scores are:                                      opt bits E(85289)
NP_006003 (OMIM: 601119,614129) ATP-dependent Clp  ( 277) 1846 406.2 3.4e-113


>>NP_006003 (OMIM: 601119,614129) ATP-dependent Clp prot  (277 aa)
 initn: 1846 init1: 1846 opt: 1846  Z-score: 2153.2  bits: 406.2 E(85289): 3.4e-113
Smith-Waterman score: 1846; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE5 MWPGILVGGARVASCRYPALGPRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MWPGILVGGARVASCRYPALGPRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPLIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYIN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 SPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 SGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGI
              190       200       210       220       230       240

              250       260       270       
pF1KE5 LDKVLVHPPQDGEDEPTLVQKEPVEAAPAAEPVPAST
       :::::::::::::::::::::::::::::::::::::
NP_006 LDKVLVHPPQDGEDEPTLVQKEPVEAAPAAEPVPAST
              250       260       270       




277 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:38:45 2016 done: Mon Nov  7 23:38:46 2016
 Total Scan time:  5.680 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]