FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5302, 277 aa
  1>>>pF1KE5302 277 - 277 aa - 277 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5454+/-0.000679; mu= 14.5631+/- 0.041
 mean_var=71.7407+/-14.610, 0's: 0 Z-trim(110.3): 10  B-trim: 0 in 0/50
 Lambda= 0.151423
 statistics sampled from 11533 (11536) to 11533 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.354), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS12162.1 CLPP gene_id:8192|Hs108|chr19          ( 277) 1846 411.8 2.6e-115


>>CCDS12162.1 CLPP gene_id:8192|Hs108|chr19               (277 aa)
 initn: 1846 init1: 1846 opt: 1846  Z-score: 2183.5  bits: 411.8 E(32554): 2.6e-115
Smith-Waterman score: 1846; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE5 MWPGILVGGARVASCRYPALGPRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MWPGILVGGARVASCRYPALGPRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPLIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYIN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 SPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 SGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGI
              190       200       210       220       230       240

              250       260       270       
pF1KE5 LDKVLVHPPQDGEDEPTLVQKEPVEAAPAAEPVPAST
       :::::::::::::::::::::::::::::::::::::
CCDS12 LDKVLVHPPQDGEDEPTLVQKEPVEAAPAAEPVPAST
              250       260       270       




277 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:38:44 2016 done: Mon Nov  7 23:38:44 2016
 Total Scan time:  2.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]