FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4544, 634 aa 1>>>pF1KE4544 634 - 634 aa - 634 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5842+/-0.00114; mu= 17.6915+/- 0.068 mean_var=68.7414+/-13.687, 0's: 0 Z-trim(102.0): 37 B-trim: 0 in 0/51 Lambda= 0.154691 statistics sampled from 6766 (6776) to 6766 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.208), width: 16 Scan time: 3.460 The best scores are: opt bits E(32554) CCDS5793.1 POT1 gene_id:25913|Hs108|chr7 ( 634) 4230 953.7 0 >>CCDS5793.1 POT1 gene_id:25913|Hs108|chr7 (634 aa) initn: 4230 init1: 4230 opt: 4230 Z-score: 5099.3 bits: 953.7 E(32554): 0 Smith-Waterman score: 4230; 100.0% identity (100.0% similar) in 634 aa overlap (1-634:1-634) 10 20 30 40 50 60 pF1KE4 MSLVPATNYIYTPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 MSLVPATNYIYTPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 LFSGNYEALPIIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 LFSGNYEALPIIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 KYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 KYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKVGSFLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 LKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKVGSFLR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 IYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLESANLTAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 IYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLESANLTAN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 QHSDVICQSEPDDSFPSSGSVSLYEVERCQQLSATILTDHQYLERTPLCAILKQKAPQQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 QHSDVICQSEPDDSFPSSGSVSLYEVERCQQLSATILTDHQYLERTPLCAILKQKAPQQY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 RIRAKLRSYKPRRLFQSVKLHCPKCHLLQEVPHEGDLDIIFQDGATKTPDVKLQNTSLYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 RIRAKLRSYKPRRLFQSVKLHCPKCHLLQEVPHEGDLDIIFQDGATKTPDVKLQNTSLYD 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 SKIWTTKNQKGRKVAVHFVKNNGILPLSNECLLLIEGGTLSEICKLSNKFNSVIPVRSGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 SKIWTTKNQKGRKVAVHFVKNNGILPLSNECLLLIEGGTLSEICKLSNKFNSVIPVRSGH 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 EDLELLDLSAPFLIQGTIHHYGCKQCSSLRSIQNLNSLVDKTSWIPSSVAEALGIVPLQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 EDLELLDLSAPFLIQGTIHHYGCKQCSSLRSIQNLNSLVDKTSWIPSSVAEALGIVPLQY 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 VFVMTFTLDDGTGVLEAYLMDSDKFFQIPASEVLMDDDLQKSVDMIMDMFCPPGIKIDAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 VFVMTFTLDDGTGVLEAYLMDSDKFFQIPASEVLMDDDLQKSVDMIMDMFCPPGIKIDAY 550 560 570 580 590 600 610 620 630 pF1KE4 PWLECFIKSYNVTNGTDNQICYQIFDTTVAEDVI :::::::::::::::::::::::::::::::::: CCDS57 PWLECFIKSYNVTNGTDNQICYQIFDTTVAEDVI 610 620 630 634 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:05:51 2016 done: Sun Nov 6 00:05:52 2016 Total Scan time: 3.460 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]