FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5517, 441 aa 1>>>pF1KE5517 441 - 441 aa - 441 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1923+/-0.000835; mu= 13.7675+/- 0.050 mean_var=89.0573+/-17.486, 0's: 0 Z-trim(109.1): 9 B-trim: 0 in 0/51 Lambda= 0.135906 statistics sampled from 10626 (10631) to 10626 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.327), width: 16 Scan time: 2.880 The best scores are: opt bits E(32554) CCDS6730.1 TRMO gene_id:51531|Hs108|chr9 ( 441) 3008 599.7 1.9e-171 CCDS83387.1 TRMO gene_id:51531|Hs108|chr9 ( 295) 2007 403.3 1.6e-112 >>CCDS6730.1 TRMO gene_id:51531|Hs108|chr9 (441 aa) initn: 3008 init1: 3008 opt: 3008 Z-score: 3191.6 bits: 599.7 E(32554): 1.9e-171 Smith-Waterman score: 3008; 99.8% identity (99.8% similar) in 441 aa overlap (1-441:1-441) 10 20 30 40 50 60 pF1KE5 MRGLEEPGPRPTATPCGCVKPALETGNLLTEPVGYLESCFSAKNGTPRQPSICSYSRACL :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 MRGLEESGPRPTATPCGCVKPALETGNLLTEPVGYLESCFSAKNGTPRQPSICSYSRACL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 RIRKRIFNNPEHSLMGLEQFSHVWILFVFHKNGHLSCKAKVQPPRLNGAKTGVFSTRSPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 RIRKRIFNNPEHSLMGLEQFSHVWILFVFHKNGHLSCKAKVQPPRLNGAKTGVFSTRSPH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 RPNAIGLTLAKLEKVEGGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEPLADFNLQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 RPNAIGLTLAKLEKVEGGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEPLADFNLQN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NQHTPNTVSQSDSKTDSCDQRQLSGCDEPQPHHSTKRKPKCPEDRTSEENYLTHSDTARI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 NQHTPNTVSQSDSKTDSCDQRQLSGCDEPQPHHSTKRKPKCPEDRTSEENYLTHSDTARI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 QQAFPMHREIAVDFGLESRRDQSSSVAEEQIGPYCPEKSFSEKGTDKKLERVEGAAVLQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 QQAFPMHREIAVDFGLESRRDQSSSVAEEQIGPYCPEKSFSEKGTDKKLERVEGAAVLQG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 SRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATLEVRFTPHAEMDLGQLSSQDVGQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 SRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATLEVRFTPHAEMDLGQLSSQDVGQA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAEVLRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 SFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAEVLRI 370 380 390 400 410 420 430 440 pF1KE5 KPASEPVHMTGPVGSLVSLGS ::::::::::::::::::::: CCDS67 KPASEPVHMTGPVGSLVSLGS 430 440 >>CCDS83387.1 TRMO gene_id:51531|Hs108|chr9 (295 aa) initn: 2007 init1: 2007 opt: 2007 Z-score: 2133.6 bits: 403.3 E(32554): 1.6e-112 Smith-Waterman score: 2007; 100.0% identity (100.0% similar) in 295 aa overlap (147-441:1-295) 120 130 140 150 160 170 pF1KE5 RSPHRPNAIGLTLAKLEKVEGGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEPLADF :::::::::::::::::::::::::::::: CCDS83 MIHGTPVLDIKPYIAEYDSPQNVMEPLADF 10 20 30 180 190 200 210 220 230 pF1KE5 NLQNNQHTPNTVSQSDSKTDSCDQRQLSGCDEPQPHHSTKRKPKCPEDRTSEENYLTHSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 NLQNNQHTPNTVSQSDSKTDSCDQRQLSGCDEPQPHHSTKRKPKCPEDRTSEENYLTHSD 40 50 60 70 80 90 240 250 260 270 280 290 pF1KE5 TARIQQAFPMHREIAVDFGLESRRDQSSSVAEEQIGPYCPEKSFSEKGTDKKLERVEGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 TARIQQAFPMHREIAVDFGLESRRDQSSSVAEEQIGPYCPEKSFSEKGTDKKLERVEGAA 100 110 120 130 140 150 300 310 320 330 340 350 pF1KE5 VLQGSRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATLEVRFTPHAEMDLGQLSSQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 VLQGSRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATLEVRFTPHAEMDLGQLSSQD 160 170 180 190 200 210 360 370 380 390 400 410 pF1KE5 VGQASFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 VGQASFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAE 220 230 240 250 260 270 420 430 440 pF1KE5 VLRIKPASEPVHMTGPVGSLVSLGS ::::::::::::::::::::::::: CCDS83 VLRIKPASEPVHMTGPVGSLVSLGS 280 290 441 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:24:23 2016 done: Tue Nov 8 01:24:24 2016 Total Scan time: 2.880 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]