FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3663, 196 aa 1>>>pF1KE3663 196 - 196 aa - 196 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3644+/-0.000618; mu= 9.9353+/- 0.038 mean_var=110.6931+/-21.952, 0's: 0 Z-trim(115.4): 15 B-trim: 0 in 0/53 Lambda= 0.121903 statistics sampled from 15985 (15999) to 15985 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.491), width: 16 Scan time: 2.350 The best scores are: opt bits E(32554) CCDS9189.1 HSPB8 gene_id:26353|Hs108|chr12 ( 196) 1382 252.5 1.2e-67 CCDS5583.1 HSPB1 gene_id:3315|Hs108|chr7 ( 205) 395 78.9 2.3e-15 >>CCDS9189.1 HSPB8 gene_id:26353|Hs108|chr12 (196 aa) initn: 1382 init1: 1382 opt: 1382 Z-score: 1327.7 bits: 252.5 E(32554): 1.2e-67 Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KE3 MADGQMPFSCHYPSRLRRDPFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 MADGQMPFSCHYPSRLRRDPFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PGTLRSGMVPRGPTATARFGVPAEGRTPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 PGTLRSGMVPRGPTATARFGVPAEGRTPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQVPPYSTFGES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 VSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQVPPYSTFGES 130 140 150 160 170 180 190 pF1KE3 SFNNELPQDSQEVTCT :::::::::::::::: CCDS91 SFNNELPQDSQEVTCT 190 >>CCDS5583.1 HSPB1 gene_id:3315|Hs108|chr7 (205 aa) initn: 441 init1: 303 opt: 395 Z-score: 389.3 bits: 78.9 E(32554): 2.3e-15 Smith-Waterman score: 405; 39.6% identity (62.0% similar) in 187 aa overlap (1-176:1-174) 10 20 30 40 50 pF1KE3 MADGQMPFSC-HYPSRLRRDPFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSA :.. ..::: . :: ::::: :::.:..::. .:.. : .: .:. CCDS55 MTERRVPFSLLRGPSW---DPFRDWYPHSRLFDQAFGLPRLPEE----WSQWL---GGSS 10 20 30 40 50 60 70 80 90 100 pF1KE3 WPGTLRSGMVPRGPTATARFGVPAEGR----------TPPPFPGEPWKVCVNVHSFKPEE ::: .: .: . . ..:: .: . .. :.: ..:. : :.: CCDS55 WPGYVRP--LPPAAIESPAVAAPAYSRALSRQLSSGVSEIRHTADRWRVSLDVNHFAPDE 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 LMVKTKDGYVEVSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAP : :::::: ::..:::::.:.: : .:. ::.: :: :::. : .:::::: : .::: CCDS55 LTVKTKDGVVEITGKHEERQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP 110 120 130 140 150 160 170 180 190 pF1KE3 QVPPYSTFGESSFNNELPQDSQEVTCT .: .: CCDS55 -MPKLATQSNEITIPVTFESRAQLGGPEAAKSDETAAK 170 180 190 200 196 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:37:01 2016 done: Mon Nov 7 02:37:02 2016 Total Scan time: 2.350 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]