FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6123, 151 aa
  1>>>pF1KE6123 151 - 151 aa - 151 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1665+/-0.000285; mu= 13.2890+/- 0.018
 mean_var=68.5052+/-14.002, 0's: 0 Z-trim(118.9): 4  B-trim: 374 in 1/53
 Lambda= 0.154957
 statistics sampled from 32264 (32266) to 32264 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.378), width:  16
 Scan time:  5.280

The best scores are:                                      opt bits E(85289)
NP_006423 (OMIM: 601015,607625) epididymal secreto ( 151) 1025 237.1 8.3e-63
XP_016876419 (OMIM: 601015,607625) PREDICTED: epid ( 174) 1010 233.8 9.5e-62


>>NP_006423 (OMIM: 601015,607625) epididymal secretory p  (151 aa)
 initn: 1025 init1: 1025 opt: 1025  Z-score: 1248.6  bits: 237.1 E(85289): 8.3e-63
Smith-Waterman score: 1025; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KE6 MRFLAATFLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MRFLAATFLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYP
               70        80        90       100       110       120

              130       140       150 
pF1KE6 SIKLVVEWQLQDDKNQSLFCWEIPVQIVSHL
       :::::::::::::::::::::::::::::::
NP_006 SIKLVVEWQLQDDKNQSLFCWEIPVQIVSHL
              130       140       150 

>>XP_016876419 (OMIM: 601015,607625) PREDICTED: epididym  (174 aa)
 initn: 1010 init1: 1010 opt: 1010  Z-score: 1229.6  bits: 233.8 E(85289): 9.5e-62
Smith-Waterman score: 1010; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KE6 MRFLAATFLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRFLAATFLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYP
               70        80        90       100       110       120

              130       140       150                        
pF1KE6 SIKLVVEWQLQDDKNQSLFCWEIPVQIVSHL                       
       :::::::::::::::::::::::::::::                         
XP_016 SIKLVVEWQLQDDKNQSLFCWEIPVQIVSLSGGERAWVEGRKWRRNQTETKSVP
              130       140       150       160       170    




151 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:39:06 2016 done: Tue Nov  8 09:39:07 2016
 Total Scan time:  5.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]