FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6242, 277 aa
  1>>>pF1KE6242 277 - 277 aa - 277 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3883+/-0.00072; mu= 15.2014+/- 0.043
 mean_var=69.4727+/-13.903, 0's: 0 Z-trim(109.3): 65  B-trim: 412 in 1/49
 Lambda= 0.153875
 statistics sampled from 10738 (10805) to 10738 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.332), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS13641.1 CBR1 gene_id:873|Hs108|chr21           ( 277) 1830 414.8 3.4e-116
CCDS13642.1 CBR3 gene_id:874|Hs108|chr21           ( 277) 1353 308.9 2.6e-84
CCDS68202.1 CBR1 gene_id:873|Hs108|chr21           ( 173)  864 200.2 8.2e-52


>>CCDS13641.1 CBR1 gene_id:873|Hs108|chr21                (277 aa)
 initn: 1830 init1: 1830 opt: 1830  Z-score: 2199.6  bits: 414.8 E(32554): 3.4e-116
Smith-Waterman score: 1830; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE6 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKA
              190       200       210       220       230       240

              250       260       270       
pF1KE6 TKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRVEQW
       :::::::::::::::::::::::::::::::::::::
CCDS13 TKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRVEQW
              250       260       270       

>>CCDS13642.1 CBR3 gene_id:874|Hs108|chr21                (277 aa)
 initn: 1402 init1: 1353 opt: 1353  Z-score: 1627.3  bits: 308.9 E(32554): 2.6e-84
Smith-Waterman score: 1353; 71.8% identity (91.3% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE6 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH
       :::  .::::::.:.::::::.:.::: ::::::::::::.:::::::::::::::::::
CCDS13 MSSCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD
       ::::::::::::::::::::::::.::::::..:::  :: :: :.::.:.:::::.::.
CCDS13 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAVAFKSDDPMPFDIKAEMTLKTNFFATRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK
       .:.::::..::.:::::.::.. .::...:: .::..:.:::.:: .:: ::.:::::::
CCDS13 MCNELLPIMKPHGRVVNISSLQCLRAFENCSEDLQERFHSETLTEGDLVDLMKKFVEDTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKA
       . ::..::::.: :::.:.:::::::: ::.:.:.::.:.::.:::::: :.::: :  .
CCDS13 NEVHEREGWPNSPYGVSKLGVTVLSRILARRLDEKRKADRILVNACCPGPVKTDMDGKDS
              190       200       210       220       230       240

              250       260       270       
pF1KE6 TKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRVEQW
        .. :::::::::::::::::  :.::.: .: :..:
CCDS13 IRTVEEGAETPVYLALLPPDATEPQGQLVHDKVVQNW
              250       260       270       

>>CCDS68202.1 CBR1 gene_id:873|Hs108|chr21                (173 aa)
 initn: 864 init1: 864 opt: 864  Z-score: 1043.6  bits: 200.2 E(32554): 8.2e-52
Smith-Waterman score: 864; 97.8% identity (98.5% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE6 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK
       ::::::::::::.  :                                            
CCDS68 VCTELLPLIKPQASCVLSAWSCLSQNPSGGKSKPLAWFTEMSIICRCLTLGPF       
              130       140       150       160       170          




277 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:23:32 2016 done: Tue Nov  8 11:23:32 2016
 Total Scan time:  2.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]