FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1375, 212 aa
  1>>>pF1KE1375 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6407+/-0.00116; mu= 8.0495+/- 0.070
 mean_var=99.2342+/-19.849, 0's: 0 Z-trim(103.7): 23  B-trim: 48 in 1/52
 Lambda= 0.128749
 statistics sampled from 7531 (7532) to 7531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.588), E-opt: 0.2 (0.231), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS3202.1 PDCD10 gene_id:11235|Hs108|chr3         ( 212) 1320 255.5 1.8e-68


>>CCDS3202.1 PDCD10 gene_id:11235|Hs108|chr3              (212 aa)
 initn: 1320 init1: 1320 opt: 1320  Z-score: 1342.7  bits: 255.5 E(32554): 1.8e-68
Smith-Waterman score: 1320; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE1 MRMTMEEMKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRMTMEEMKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DIIMKILEKKSVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DIIMKILEKKSVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 INDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 INDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKT
              130       140       150       160       170       180

              190       200       210  
pF1KE1 YFKDGKAINVFVSANRLIHQTNLILQTFKTVA
       ::::::::::::::::::::::::::::::::
CCDS32 YFKDGKAINVFVSANRLIHQTNLILQTFKTVA
              190       200       210  




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:39:41 2016 done: Mon Nov  7 02:39:42 2016
 Total Scan time:  1.970 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]