FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6305, 410 aa 1>>>pF1KE6305 410 - 410 aa - 410 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6170+/-0.00037; mu= 21.0226+/- 0.023 mean_var=66.9541+/-13.968, 0's: 0 Z-trim(113.4): 11 B-trim: 463 in 1/53 Lambda= 0.156742 statistics sampled from 22672 (22680) to 22672 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.266), width: 16 Scan time: 8.400 The best scores are: opt bits E(85289) NP_510870 (OMIM: 256000,603646,615119) cytochrome ( 410) 2753 631.6 1.1e-180 NP_001307903 (OMIM: 256000,603646,615119) cytochro ( 388) 2479 569.6 4.6e-162 NP_004367 (OMIM: 256000,603646,615119) cytochrome ( 388) 2479 569.6 4.6e-162 NP_001307904 (OMIM: 256000,603646,615119) cytochro ( 298) 1905 439.7 4.5e-123 XP_006717697 (OMIM: 256000,603646,615119) PREDICTE ( 298) 1905 439.7 4.5e-123 XP_011537600 (OMIM: 256000,603646,615119) PREDICTE ( 298) 1905 439.7 4.5e-123 NP_001307905 (OMIM: 256000,603646,615119) cytochro ( 231) 1512 350.7 2.1e-96 XP_016871204 (OMIM: 256000,603646,615119) PREDICTE ( 209) 1238 288.7 8.7e-78 >>NP_510870 (OMIM: 256000,603646,615119) cytochrome c ox (410 aa) initn: 2753 init1: 2753 opt: 2753 Z-score: 3365.2 bits: 631.6 E(85289): 1.1e-180 Smith-Waterman score: 2753; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410) 10 20 30 40 50 60 pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_510 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_510 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_510 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_510 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_510 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_510 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL 310 320 330 340 350 360 370 380 390 400 410 pF1KE6 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK :::::::::::::::::::::::::::::::::::::::::::::::::: NP_510 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK 370 380 390 400 410 >>NP_001307903 (OMIM: 256000,603646,615119) cytochrome c (388 aa) initn: 2479 init1: 2479 opt: 2479 Z-score: 3030.6 bits: 569.6 E(85289): 4.6e-162 Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367) 10 20 30 40 50 60 pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL 310 320 330 340 350 360 370 380 390 400 410 pF1KE6 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK ::::::: NP_001 LALAYTQTYYRTELSQKMQLHCNSTNMS 370 380 >>NP_004367 (OMIM: 256000,603646,615119) cytochrome c ox (388 aa) initn: 2479 init1: 2479 opt: 2479 Z-score: 3030.6 bits: 569.6 E(85289): 4.6e-162 Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367) 10 20 30 40 50 60 pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL 310 320 330 340 350 360 370 380 390 400 410 pF1KE6 LALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK ::::::: NP_004 LALAYTQGPVLFNFTFKISDLDEGIRNI 370 380 >>NP_001307904 (OMIM: 256000,603646,615119) cytochrome c (298 aa) initn: 1905 init1: 1905 opt: 1905 Z-score: 2330.6 bits: 439.7 E(85289): 4.5e-123 Smith-Waterman score: 1905; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278) 10 20 30 40 50 60 pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW :::::::::::::::::::::::::::::::::::::: NP_001 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGNHFSHCHYSALLPLSENSPS 250 260 270 280 290 310 320 330 340 350 360 pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL >>XP_006717697 (OMIM: 256000,603646,615119) PREDICTED: c (298 aa) initn: 1905 init1: 1905 opt: 1905 Z-score: 2330.6 bits: 439.7 E(85289): 4.5e-123 Smith-Waterman score: 1905; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278) 10 20 30 40 50 60 pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW :::::::::::::::::::::::::::::::::::::: XP_006 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGNHFSHCHYSALLPLSENSPS 250 260 270 280 290 310 320 330 340 350 360 pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL >>XP_011537600 (OMIM: 256000,603646,615119) PREDICTED: c (298 aa) initn: 1905 init1: 1905 opt: 1905 Z-score: 2330.6 bits: 439.7 E(85289): 4.5e-123 Smith-Waterman score: 1905; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278) 10 20 30 40 50 60 pF1KE6 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESW :::::::::::::::::::::::::::::::::::::: XP_011 SLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGNHFSHCHYSALLPLSENSPS 250 260 270 280 290 310 320 330 340 350 360 pF1KE6 IPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTL >>NP_001307905 (OMIM: 256000,603646,615119) cytochrome c (231 aa) initn: 1512 init1: 1512 opt: 1512 Z-score: 1851.8 bits: 350.7 E(85289): 2.1e-96 Smith-Waterman score: 1512; 100.0% identity (100.0% similar) in 231 aa overlap (180-410:1-231) 150 160 170 180 190 200 pF1KE6 YSHRMWGRLVGLVYILPAAYFWRKGWLSRGMKGRVLALCGLVCFQGLLGWYMVKSGLEEK :::::::::::::::::::::::::::::: NP_001 MKGRVLALCGLVCFQGLLGWYMVKSGLEEK 10 20 30 210 220 230 240 250 260 pF1KE6 SDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAG 40 50 60 70 80 90 270 280 290 300 310 320 pF1KE6 LVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRIL 100 110 120 130 140 150 330 340 350 360 370 380 pF1KE6 GITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQVGLGISTLLMYVPTPLAATHQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQVGLGISTLLMYVPTPLAATHQS 160 170 180 190 200 210 390 400 410 pF1KE6 GSLALLTGALWLMNELRRVPK ::::::::::::::::::::: NP_001 GSLALLTGALWLMNELRRVPK 220 230 >>XP_016871204 (OMIM: 256000,603646,615119) PREDICTED: c (209 aa) initn: 1238 init1: 1238 opt: 1238 Z-score: 1517.5 bits: 288.7 E(85289): 8.7e-78 Smith-Waterman score: 1238; 100.0% identity (100.0% similar) in 188 aa overlap (180-367:1-188) 150 160 170 180 190 200 pF1KE6 YSHRMWGRLVGLVYILPAAYFWRKGWLSRGMKGRVLALCGLVCFQGLLGWYMVKSGLEEK :::::::::::::::::::::::::::::: XP_016 MKGRVLALCGLVCFQGLLGWYMVKSGLEEK 10 20 30 210 220 230 240 250 260 pF1KE6 SDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAG 40 50 60 70 80 90 270 280 290 300 310 320 pF1KE6 LVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRIL 100 110 120 130 140 150 330 340 350 360 370 380 pF1KE6 GITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQVGLGISTLLMYVPTPLAATHQS :::::::::::::::::::::::::::::::::::::: XP_016 GITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQTYYRTELSQKMQLHCNSTNMS 160 170 180 190 200 390 400 410 pF1KE6 GSLALLTGALWLMNELRRVPK 410 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:55:52 2016 done: Tue Nov 8 11:55:53 2016 Total Scan time: 8.400 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]