FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4331, 338 aa 1>>>pF1KE4331 338 - 338 aa - 338 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6466+/-0.000871; mu= 14.0600+/- 0.052 mean_var=63.0350+/-12.573, 0's: 0 Z-trim(105.3): 21 B-trim: 4 in 1/49 Lambda= 0.161541 statistics sampled from 8352 (8369) to 8352 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.257), width: 16 Scan time: 2.640 The best scores are: opt bits E(32554) CCDS5581.1 MDH2 gene_id:4191|Hs108|chr7 ( 338) 2166 513.5 1e-145 CCDS75622.1 MDH2 gene_id:4191|Hs108|chr7 ( 231) 1482 354.0 7e-98 CCDS64691.1 MDH2 gene_id:4191|Hs108|chr7 ( 296) 980 237.0 1.4e-62 >>CCDS5581.1 MDH2 gene_id:4191|Hs108|chr7 (338 aa) initn: 2166 init1: 2166 opt: 2166 Z-score: 2729.6 bits: 513.5 E(32554): 1e-145 Smith-Waterman score: 2166; 99.7% identity (100.0% similar) in 338 aa overlap (1-338:1-338) 10 20 30 40 50 60 pF1KE4 MLSALARPVSAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MLSALARPASAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 TPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 VATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 VAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 KAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIE 250 260 270 280 290 300 310 320 330 pF1KE4 KNLGIGKVSSFEEKMISDAIPELKASIKKGEDFVKTLK :::::::::::::::::::::::::::::::::::::: CCDS55 KNLGIGKVSSFEEKMISDAIPELKASIKKGEDFVKTLK 310 320 330 >>CCDS75622.1 MDH2 gene_id:4191|Hs108|chr7 (231 aa) initn: 1482 init1: 1482 opt: 1482 Z-score: 1870.8 bits: 354.0 E(32554): 7e-98 Smith-Waterman score: 1482; 100.0% identity (100.0% similar) in 231 aa overlap (108-338:1-231) 80 90 100 110 120 130 pF1KE4 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMI :::::::::::::::::::::::::::::: CCDS75 MTRDDLFNTNATIVATLTAACAQHCPEAMI 10 20 30 140 150 160 170 180 190 pF1KE4 CVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 CVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVI 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE4 GGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 GGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE4 FVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 FVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMIS 160 170 180 190 200 210 320 330 pF1KE4 DAIPELKASIKKGEDFVKTLK ::::::::::::::::::::: CCDS75 DAIPELKASIKKGEDFVKTLK 220 230 >>CCDS64691.1 MDH2 gene_id:4191|Hs108|chr7 (296 aa) initn: 1890 init1: 977 opt: 980 Z-score: 1236.8 bits: 237.0 E(32554): 1.4e-62 Smith-Waterman score: 1810; 87.3% identity (87.6% similar) in 338 aa overlap (1-338:1-296) 10 20 30 40 50 60 pF1KE4 MLSALARPVSAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 MLSALARPASAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 TPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 VATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTF ::::::::::::::::::::::: CCDS64 VATLTAACAQHCPEAMICVIANP------------------------------------- 130 140 190 200 210 220 230 240 pF1KE4 VAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 -----GLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKA 150 160 170 180 190 250 260 270 280 290 300 pF1KE4 KAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 KAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIE 200 210 220 230 240 250 310 320 330 pF1KE4 KNLGIGKVSSFEEKMISDAIPELKASIKKGEDFVKTLK :::::::::::::::::::::::::::::::::::::: CCDS64 KNLGIGKVSSFEEKMISDAIPELKASIKKGEDFVKTLK 260 270 280 290 338 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 06:27:01 2016 done: Thu Nov 3 06:27:02 2016 Total Scan time: 2.640 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]