(Circular) (Six-base) MAPSORT of: pFN21AE1378.seq Check: 9730 from: 1 to: 5452 pFN21AE1378 5452 bp With 182 enzymes: SgfI * August 16, 2010 14:46 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3262 278 Size: 53 83 186 936 1726 2468 Fragments arranged by size: 2468 1726 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2795 1937 Size: 858 4594 Acc65I G'GTAC_C Cuts at: 2773 2773 Size: 5452 AclI AA'CG_TT Cuts at: 1563 3579 3952 1563 Size: 2016 373 3063 Fragments arranged by size: 3063 2016 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3515 4899 5167 1632 Size: 1883 1384 268 1917 Fragments arranged by size: 1917 1883 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5255 AflIII A'CryG_T Cuts at: 1203 2065 4351 5328 1203 Size: 862 2286 977 1327 Fragments arranged by size: 2286 1327 977 862 AgeI A'CCGG_T Cuts at: 4283 4283 Size: 5452 AhdI GACnn_n'nnGTC Cuts at: 4181 4181 Size: 5452 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5452 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5452 AlwNI CAG_nnn'CTG Cuts at: 2237 3195 4767 2237 Size: 958 1572 2922 Fragments arranged by size: 2922 1572 958 ApaI G_GGCC'C Cuts at: 2032 2032 Size: 5452 ApaLI G'TGCA_C Cuts at: 2123 3509 4665 2123 Size: 1386 1156 2910 Fragments arranged by size: 2910 1386 1156 ApoI r'AATT_y Cuts at: 1493 2074 2761 2987 3139 5248 1493 Size: 581 687 226 152 2109 1697 Fragments arranged by size: 2109 1697 687 581 226 152 AseI AT'TA_AT Cuts at: 160 1032 4006 160 Size: 872 2974 1606 Fragments arranged by size: 2974 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5452 AvaI C'yCGr_G Cuts at: 1870 1943 2031 2777 1870 Size: 73 88 746 4545 Fragments arranged by size: 4545 746 88 73 BamHI G'GATC_C Cuts at: 2782 3149 2782 Size: 367 5085 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2773 4228 618 Size: 325 217 627 986 1455 1842 Fragments arranged by size: 1842 1455 986 627 325 217 BanII G_rGCy'C Cuts at: 1391 2032 2628 2771 1391 Size: 641 596 143 4072 Fragments arranged by size: 4072 641 596 143 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2068 928 Size: 971 169 4312 Fragments arranged by size: 4312 971 169 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3643 3677 1903 Size: 34 1706 34 3678 Fragments arranged by size: 3678 1706 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3344 4554 3344 Size: 1210 4242 BclI T'GATC_A Cuts at: 1548 1548 Size: 5452 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2036 4063 136 Size: 107 122 71 631 605 364 2027 1525 Fragments arranged by size: 2027 1525 631 605 364 122 107 71 BglII A'GATC_T Cuts at: 5447 5447 Size: 5452 BlpI GC'TnA_GC Cuts at: 2869 2869 Size: 5452 Bme1580I G_kGCm'C Cuts at: 1790 2032 2127 3513 4669 1790 Size: 242 95 1386 1156 2573 Fragments arranged by size: 2573 1386 1156 242 95 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5452 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2065 3183 4141 Size: 416 53 83 399 24 648 1118 958 Cuts at: 4141 442 Size: 1753 Fragments arranged by size: 1753 1118 958 648 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5452 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2127 2471 2709 4112 1239 Size: 888 344 238 1403 2579 Fragments arranged by size: 2579 1403 888 344 238 Bpu10I CC'TnA_GC Cuts at: 2598 2598 Size: 5452 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2612 3577 4442 4740 2612 Size: 965 865 298 3324 Fragments arranged by size: 3324 965 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4115 882 Size: 617 2616 2219 Fragments arranged by size: 2616 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3243 493 Size: 711 2039 2702 Fragments arranged by size: 2702 2039 711 BsaBI GATnn'nnATC Cuts at: 5446 5446 Size: 5452 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3259 3641 4276 275 Size: 53 83 186 936 1726 382 635 1451 Fragments arranged by size: 1726 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3885 4283 4557 4704 5115 3885 Size: 398 274 147 411 4222 Fragments arranged by size: 4222 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5227 Fragments arranged by size: 5227 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2124 1186 Size: 938 4514 BseYI C'CCAG_C Cuts at: 4655 5151 4655 Size: 496 4956 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2392 1163 Size: 573 656 4223 Fragments arranged by size: 4223 656 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2902 3663 4691 1540 Size: 275 186 901 761 1028 2301 Fragments arranged by size: 2301 1028 901 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2127 2628 3513 3598 4669 2127 Size: 501 885 85 1071 2910 Fragments arranged by size: 2910 1071 885 501 85 BsmI GAATG_Cn' Cuts at: 2963 3056 2963 Size: 93 5359 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2032 2127 2628 2771 3513 3598 4669 Size: 399 242 95 501 143 742 85 1071 Cuts at: 4669 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 501 399 242 143 95 85 BspEI T'CCGG_A Cuts at: 5115 5115 Size: 5452 BspHI T'CATG_A Cuts at: 3341 5071 3341 Size: 1730 3722 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2807 844 Size: 1963 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3339 1394 Size: 429 1516 3507 Fragments arranged by size: 3507 1516 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3947 4121 65 Size: 1183 2699 174 1396 Fragments arranged by size: 2699 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4096 4283 1700 Size: 110 2286 187 2869 Fragments arranged by size: 2869 2286 187 110 BsrGI T'GTAC_A Cuts at: 96 2737 96 Size: 2641 2811 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5452 BssSI C'ACGA_G Cuts at: 3512 4524 3512 Size: 1012 4440 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5452 BstBI TT'CG_AA Cuts at: 2431 4256 2431 Size: 1825 3627 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5452 BstYI r'GATC_y Cuts at: 1972 2782 3149 3534 3551 5003 5089 5101 5447 Size: 810 367 385 17 1452 86 12 346 Cuts at: 5447 1972 Size: 1977 Fragments arranged by size: 1977 1452 810 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2016 513 Size: 552 951 3949 Fragments arranged by size: 3949 951 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4713 Fragments arranged by size: 4713 683 56 BtsI GCAGTG_nn' Cuts at: 2968 3762 3782 2968 Size: 794 20 4638 Fragments arranged by size: 4638 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5452 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5417 DraI TTT'AAA Cuts at: 2756 2756 Size: 5452 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4459 809 Size: 507 3143 1802 Fragments arranged by size: 3143 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2899 3788 5417 Size: 54 1425 50 275 18 1069 889 1629 Cuts at: 5417 8 Size: 43 Fragments arranged by size: 1629 1425 1069 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2899 1537 Size: 275 1087 4090 Fragments arranged by size: 4090 1087 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3382 1353 Size: 2029 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4039 4413 4559 387 Size: 1064 138 2450 374 146 1280 Fragments arranged by size: 2450 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2626 2626 Size: 5452 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2127 2471 2709 3515 4112 4899 5167 Size: 393 495 344 238 806 597 787 268 Cuts at: 5167 1239 Size: 1524 Fragments arranged by size: 1524 806 787 597 495 393 344 268 238 EcoO109I rG'GnC_Cy Cuts at: 2538 2723 2538 Size: 185 5267 EcoRI G'AATT_C Cuts at: 2761 3139 2761 Size: 378 5074 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2765 2765 Size: 5452 FspI TGC'GCA Cuts at: 3958 3958 Size: 5452 HaeII r_GCGC'y Cuts at: 1678 2024 4599 1678 Size: 346 2575 2531 Fragments arranged by size: 2575 2531 346 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4093 4125 4167 4199 1373 Size: 32 135 32 2521 32 42 32 2626 Fragments arranged by size: 2626 2521 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2796 3042 669 Size: 988 281 858 246 3079 Fragments arranged by size: 3079 988 858 281 246 HindIII A'AGCT_T Cuts at: 748 2468 748 Size: 1720 3732 HpaI GTT'AAC Cuts at: 3042 3042 Size: 5452 KpnI G_GTAC'C Cuts at: 2777 2777 Size: 5452 MfeI C'AATT_G Cuts at: 2199 3051 2199 Size: 852 4600 MluI A'CGCG_T Cuts at: 5328 5328 Size: 5452 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2365 4566 4750 1305 Size: 1060 2201 184 2007 Fragments arranged by size: 2201 2007 1060 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3630 Fragments arranged by size: 3630 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3410 3769 3928 518 Size: 648 2244 359 159 2042 Fragments arranged by size: 2244 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2018 2237 2687 2868 3545 4693 4938 1606 Size: 412 219 450 181 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 450 412 245 219 181 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4900 NdeI CA'TA_TG Cuts at: 387 387 Size: 5452 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5452 NotI GC'GGCC_GC Cuts at: 2899 2899 Size: 5452 NspI r_CATG'y Cuts at: 1132 1229 2069 2428 2810 4355 1132 Size: 97 840 359 382 1545 2229 Fragments arranged by size: 2229 1545 840 382 359 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5452 PciI A'CATG_T Cuts at: 2065 4351 2065 Size: 2286 3166 PflMI CCAn_nnn'nTGG Cuts at: 1108 2663 1108 Size: 1555 3897 PfoI T'CCnGG_A Cuts at: 2250 2250 Size: 5452 PmeI GTTT'AAAC Cuts at: 2756 2756 Size: 5452 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3521 3553 5034 5066 3521 Size: 32 1481 32 3907 Fragments arranged by size: 3907 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2723 2723 Size: 5452 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5452 PsiI TTA'TAA Cuts at: 3022 3022 Size: 5452 PspOMI G'GGCC_C Cuts at: 2028 2028 Size: 5452 PstI C_TGCA'G Cuts at: 830 2804 830 Size: 1974 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5452 PvuII CAG'CTG Cuts at: 2237 2687 2237 Size: 450 5002 SacI G_AGCT'C Cuts at: 2628 2628 Size: 5452 SacII CC_GC'GG Cuts at: 2019 2019 Size: 5452 SalI G'TCGA_C Cuts at: 1936 2794 1936 Size: 858 4594 SbfI CC_TGCA'GG Cuts at: 2804 2804 Size: 5452 ScaI AGT'ACT Cuts at: 3700 5412 3700 Size: 1712 3740 SfcI C'TryA_G Cuts at: 826 1045 2800 3935 4616 4807 826 Size: 219 1755 1135 681 191 1471 Fragments arranged by size: 1755 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5452 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5452 SmaI CCC'GGG Cuts at: 1872 2033 2779 1872 Size: 161 746 4545 Fragments arranged by size: 4545 746 161 SmlI C'TyrA_G Cuts at: 820 1017 1943 2627 3556 4457 4719 820 Size: 197 926 684 929 901 262 1553 Fragments arranged by size: 1553 929 926 901 684 262 197 SnaBI TAC'GTA Cuts at: 493 3243 493 Size: 2750 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5452 SphI G_CATG'C Cuts at: 1132 2428 2810 1132 Size: 1296 382 3774 Fragments arranged by size: 3774 1296 382 SrfI GCCC'GGGC Cuts at: 2033 2033 Size: 5452 SspI AAT'ATT Cuts at: 5 52 3376 5 Size: 47 3324 2081 Fragments arranged by size: 3324 2081 47 StuI AGG'CCT Cuts at: 1517 2748 1517 Size: 1231 4221 StyI C'CwwG_G Cuts at: 513 1065 2657 2718 2891 513 Size: 552 1592 61 173 3074 Fragments arranged by size: 3074 1592 552 173 61 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2265 2731 3479 3496 3649 3834 4279 Size: 1255 685 466 748 17 153 185 445 Cuts at: 4279 325 Size: 1498 Fragments arranged by size: 1498 1255 748 685 466 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2737 3698 5410 Size: 274 80 33 51 1443 760 961 1712 Cuts at: 5410 96 Size: 138 Fragments arranged by size: 1712 1443 961 760 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5412 5444 5412 Size: 32 5420 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5452 XbaI T'CTAG_A Cuts at: 2788 2788 Size: 5452 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2270 2270 Size: 5452 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5452 XmaI C'CCGG_G Cuts at: 1870 2031 2777 1870 Size: 161 746 4545 Fragments arranged by size: 4545 746 161 XmnI GAAnn'nnTTC Cuts at: 3581 3581 Size: 5452 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3260 276 Size: 53 83 186 936 1726 2468 Fragments arranged by size: 2468 1726 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SacI SacII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SrfI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspXI PsrI RsrII SanDI SapI SexAI SfiI SfoI SwaI