FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1378, 249 aa 1>>>pF1KE1378 249 - 249 aa - 249 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5698+/-0.00031; mu= 13.5543+/- 0.019 mean_var=71.7958+/-14.411, 0's: 0 Z-trim(117.5): 5 B-trim: 290 in 1/54 Lambda= 0.151365 statistics sampled from 29579 (29584) to 29579 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.347), width: 16 Scan time: 6.420 The best scores are: opt bits E(85289) NP_066552 (OMIM: 252010,600532) NADH dehydrogenase ( 249) 1688 377.2 1.5e-104 XP_016881271 (OMIM: 252010,600532) PREDICTED: NADH ( 220) 1493 334.6 8.7e-92 >>NP_066552 (OMIM: 252010,600532) NADH dehydrogenase [ub (249 aa) initn: 1688 init1: 1688 opt: 1688 Z-score: 1998.1 bits: 377.2 E(85289): 1.5e-104 Smith-Waterman score: 1688; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249) 10 20 30 40 50 60 pF1KE1 MFFSAALRARAAGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MFFSAALRARAAGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG 190 200 210 220 230 240 pF1KE1 PGFGVQAGL ::::::::: NP_066 PGFGVQAGL >>XP_016881271 (OMIM: 252010,600532) PREDICTED: NADH deh (220 aa) initn: 1493 init1: 1493 opt: 1493 Z-score: 1768.8 bits: 334.6 E(85289): 8.7e-92 Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 220 aa overlap (30-249:1-220) 10 20 30 40 50 60 pF1KE1 MFFSAALRARAAGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENY ::::::::::::::::::::::::::::::: XP_016 MQNGAGGALFVHRDTPENNPDTPFDFTPENY 10 20 30 70 80 90 100 110 120 pF1KE1 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE1 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG 160 170 180 190 200 210 pF1KE1 PGFGVQAGL ::::::::: XP_016 PGFGVQAGL 220 249 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:48:18 2016 done: Mon Nov 7 02:48:19 2016 Total Scan time: 6.420 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]