FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1377, 526 aa 1>>>pF1KE1377 526 - 526 aa - 526 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3821+/-0.00094; mu= 5.9853+/- 0.057 mean_var=190.8544+/-39.602, 0's: 0 Z-trim(112.5): 78 B-trim: 0 in 0/52 Lambda= 0.092837 statistics sampled from 13142 (13216) to 13142 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.406), width: 16 Scan time: 3.580 The best scores are: opt bits E(32554) CCDS1356.1 NCF2 gene_id:4688|Hs108|chr1 ( 526) 3521 484.0 1.8e-136 CCDS53447.1 NCF2 gene_id:4688|Hs108|chr1 ( 481) 2417 336.1 5.6e-92 CCDS53446.1 NCF2 gene_id:4688|Hs108|chr1 ( 445) 2186 305.1 1.1e-82 CCDS7042.1 NOXA1 gene_id:10811|Hs108|chr9 ( 483) 526 82.8 9.8e-16 >>CCDS1356.1 NCF2 gene_id:4688|Hs108|chr1 (526 aa) initn: 3521 init1: 3521 opt: 3521 Z-score: 2563.4 bits: 484.0 E(32554): 1.8e-136 Smith-Waterman score: 3521; 99.6% identity (100.0% similar) in 526 aa overlap (1-526:1-526) 10 20 30 40 50 60 pF1KE1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAEPPPRPKTPEIFRAL .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAEPPPRPKTPEIFRAL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 EGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVELR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 EGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVELR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 IHPQQQPQEESSPQSDIPAPPSSKAPGRPQLSPGQKQKEEPKEVKLSVPMPYTLKVHYKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 IHPQQQPQEESSPQSDIPAPPSSKAPGRPQLSPGQKQKEEPKEVKLSVPMPYTLKVHYKY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 TVVMKTQPGLPYSQVRDMVSKKLELRLEQTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: CCDS13 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 CLTLWCENTVGDQGFPDEPKESEKADANNQTTEPQLKKGSQVEALFSYEATQPEDLEFQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CLTLWCENTVGDQGFPDEPKESEKADANNQTTEPQLKKGSQVEALFSYEATQPEDLEFQE 430 440 450 460 470 480 490 500 510 520 pF1KE1 GDIILVLSKVNEEWLEGECKGKVGIFPKVFVEDCATTDLESTRREV :::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GDIILVLSKVNEEWLEGECKGKVGIFPKVFVEDCATTDLESTRREV 490 500 510 520 >>CCDS53447.1 NCF2 gene_id:4688|Hs108|chr1 (481 aa) initn: 3207 init1: 2416 opt: 2417 Z-score: 1764.8 bits: 336.1 E(32554): 5.6e-92 Smith-Waterman score: 3121; 91.1% identity (91.4% similar) in 526 aa overlap (1-526:1-481) 10 20 30 40 50 60 pF1KE1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVG :: ::::::::::::: CCDS53 CE---------------------------------------------KQKLYEPVVIPVG 130 190 200 210 220 230 240 pF1KE1 RLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAEPPPRPKTPEIFRAL .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 KLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAEPPPRPKTPEIFRAL 140 150 160 170 180 190 250 260 270 280 290 300 pF1KE1 EGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVELR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 EGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVELR 200 210 220 230 240 250 310 320 330 340 350 360 pF1KE1 IHPQQQPQEESSPQSDIPAPPSSKAPGRPQLSPGQKQKEEPKEVKLSVPMPYTLKVHYKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 IHPQQQPQEESSPQSDIPAPPSSKAPGRPQLSPGQKQKEEPKEVKLSVPMPYTLKVHYKY 260 270 280 290 300 310 370 380 390 400 410 420 pF1KE1 TVVMKTQPGLPYSQVRDMVSKKLELRLEQTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: CCDS53 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY 320 330 340 350 360 370 430 440 450 460 470 480 pF1KE1 CLTLWCENTVGDQGFPDEPKESEKADANNQTTEPQLKKGSQVEALFSYEATQPEDLEFQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 CLTLWCENTVGDQGFPDEPKESEKADANNQTTEPQLKKGSQVEALFSYEATQPEDLEFQE 380 390 400 410 420 430 490 500 510 520 pF1KE1 GDIILVLSKVNEEWLEGECKGKVGIFPKVFVEDCATTDLESTRREV :::::::::::::::::::::::::::::::::::::::::::::: CCDS53 GDIILVLSKVNEEWLEGECKGKVGIFPKVFVEDCATTDLESTRREV 440 450 460 470 480 >>CCDS53446.1 NCF2 gene_id:4688|Hs108|chr1 (445 aa) initn: 2186 init1: 2186 opt: 2186 Z-score: 1598.0 bits: 305.1 E(32554): 1.1e-82 Smith-Waterman score: 2819; 84.4% identity (84.6% similar) in 526 aa overlap (1-526:1-445) 10 20 30 40 50 60 pF1KE1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVG ::: CCDS53 CEV--------------------------------------------------------- 190 200 210 220 230 240 pF1KE1 RLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAEPPPRPKTPEIFRAL :::::::::::::::::::::::::::::::::::: CCDS53 ------------------------VASVVDQDSFSGFAPLQPQAAEPPPRPKTPEIFRAL 130 140 150 250 260 270 280 290 300 pF1KE1 EGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVELR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 EGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVELR 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE1 IHPQQQPQEESSPQSDIPAPPSSKAPGRPQLSPGQKQKEEPKEVKLSVPMPYTLKVHYKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 IHPQQQPQEESSPQSDIPAPPSSKAPGRPQLSPGQKQKEEPKEVKLSVPMPYTLKVHYKY 220 230 240 250 260 270 370 380 390 400 410 420 pF1KE1 TVVMKTQPGLPYSQVRDMVSKKLELRLEQTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: CCDS53 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY 280 290 300 310 320 330 430 440 450 460 470 480 pF1KE1 CLTLWCENTVGDQGFPDEPKESEKADANNQTTEPQLKKGSQVEALFSYEATQPEDLEFQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 CLTLWCENTVGDQGFPDEPKESEKADANNQTTEPQLKKGSQVEALFSYEATQPEDLEFQE 340 350 360 370 380 390 490 500 510 520 pF1KE1 GDIILVLSKVNEEWLEGECKGKVGIFPKVFVEDCATTDLESTRREV :::::::::::::::::::::::::::::::::::::::::::::: CCDS53 GDIILVLSKVNEEWLEGECKGKVGIFPKVFVEDCATTDLESTRREV 400 410 420 430 440 >>CCDS7042.1 NOXA1 gene_id:10811|Hs108|chr9 (483 aa) initn: 703 init1: 526 opt: 526 Z-score: 395.9 bits: 82.8 E(32554): 9.8e-16 Smith-Waterman score: 698; 31.4% identity (53.2% similar) in 528 aa overlap (2-511:3-460) 10 20 30 40 50 pF1KE1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKA :: . . :. :. :.:. :: :: ::.: : .:.::: ::.. . . : .: CCDS70 MASLGDLVRAWHLGAQAVDRGDWARALHLFSGVPAPPARLCFNAGCVHLLAGDPEAALRA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF : .....: .::..::::. .: ... :..:. :: ::::. ::: :::.::: CCDS70 FDQAVTKDTCMAVGFFQRGVANFQLARFQEALSDFWLALEQLRGHAAIDYTQLGLRFKLQ 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPV : :::.:.: . : .: .: : : : . .:.:.. : .. : .: CCDS70 AWEVLHNVASAQCQLGLWTEAASSLREAMSKWPEGSLNGLDSALDQVQRRGSLPPRQVPR 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 GRLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAEPPPRPKTPEIFRA :..:::.. .. .: :.:::: ::::.. .:. : : :::. : . . :. CCDS70 GEVFRPHRWHLKHLEPVDFLGKAKVVASAIPDDQGWGVRPQQPQG------PGANHDARS 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 LEGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVEL : .. :. : : .: : : ... .. CCDS70 LIMDSPRAGTHQGP-LDAETEV-----------GADRCTSTAYQ---------------- 240 250 260 300 310 320 330 340 350 pF1KE1 RIHPQQQPQEESSPQSDIPAPPSSKAPGRPQLS-PGQKQKEEPKEVKL-----SVPMPYT .:.:: : : :: : :: : .. :: :.: . : :. : CCDS70 ----EQRPQVE---QVGKQAPLS---PGLPAMGGPGPGPCEDPAGAGGAGAGGSEPL-VT 270 280 290 300 310 360 370 380 390 400 410 pF1KE1 LKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEQTKLSY-RPRDSNELVPLSED-SMK . :. .::..... : :..: .... : . . .::: : .... ::. :. :.. CCDS70 VTVQCAFTVALRARRGADLSSLRALLGQALPHQAQLGQLSYLAPGEDGHWVPIPEEESLQ 320 330 340 350 360 370 420 430 440 450 460 pF1KE1 DAWGQVKNYC---LTLWCENTVGDQGFPDEPKESEKADANNQTTEPQLKKGSQVEALFSY :: : : : : :... : .: : :: : :: CCDS70 RAW-QDAAACPRGLQLQCRGAGG---------------------RPVL---YQVVAQHSY 380 390 400 410 470 480 490 500 510 520 pF1KE1 EATQPEDLEFQEGDIILVLSK-------VNEEWLEGECKGKVGIFPKVFVEDCATTDLES : :::: :..:: . :: . :.. ::::.: :..::::: :: CCDS70 SAQGPEDLGFRQGDTVDVLCEEPDVPLAVDQAWLEGHCDGRIGIFPKCFVVPAGPRMSGA 420 430 440 450 460 470 pF1KE1 TRREV CCDS70 PGRLPRSQQGDQP 480 526 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:49:34 2016 done: Mon Nov 7 02:49:35 2016 Total Scan time: 3.580 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]