FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5610, 584 aa 1>>>pF1KE5610 584 - 584 aa - 584 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5518+/-0.000844; mu= 13.0549+/- 0.051 mean_var=87.9394+/-17.211, 0's: 0 Z-trim(108.3): 12 B-trim: 7 in 1/50 Lambda= 0.136767 statistics sampled from 10137 (10143) to 10137 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.312), width: 16 Scan time: 3.610 The best scores are: opt bits E(32554) CCDS1465.1 EIF2D gene_id:1939|Hs108|chr1 ( 584) 3871 773.9 0 CCDS55680.1 EIF2D gene_id:1939|Hs108|chr1 ( 460) 1902 385.3 8.8e-107 >>CCDS1465.1 EIF2D gene_id:1939|Hs108|chr1 (584 aa) initn: 3871 init1: 3871 opt: 3871 Z-score: 4128.6 bits: 773.9 E(32554): 0 Smith-Waterman score: 3871; 100.0% identity (100.0% similar) in 584 aa overlap (1-584:1-584) 10 20 30 40 50 60 pF1KE5 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 VTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 PAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 NKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 APEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 APEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 CPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 CPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 SPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 KNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 KNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 PIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 PIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGA 490 500 510 520 530 540 550 560 570 580 pF1KE5 KDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK :::::::::::::::::::::::::::::::::::::::::::: CCDS14 KDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK 550 560 570 580 >>CCDS55680.1 EIF2D gene_id:1939|Hs108|chr1 (460 aa) initn: 3037 init1: 1902 opt: 1902 Z-score: 2030.6 bits: 385.3 E(32554): 8.8e-107 Smith-Waterman score: 2793; 78.8% identity (78.8% similar) in 584 aa overlap (1-584:1-460) 10 20 30 40 50 60 pF1KE5 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 PAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHL---- 130 140 150 160 170 190 200 210 220 230 240 pF1KE5 NKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSE CCDS55 ------------------------------------------------------------ 250 260 270 280 290 300 pF1KE5 APEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSC CCDS55 ------------------------------------------------------------ 310 320 330 340 350 360 pF1KE5 CPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 CPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEP 180 190 200 210 220 230 370 380 390 400 410 420 pF1KE5 SPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 SPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAK 240 250 260 270 280 290 430 440 450 460 470 480 pF1KE5 KNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQE 300 310 320 330 340 350 490 500 510 520 530 540 pF1KE5 PIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 PIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGA 360 370 380 390 400 410 550 560 570 580 pF1KE5 KDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK :::::::::::::::::::::::::::::::::::::::::::: CCDS55 KDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK 420 430 440 450 460 584 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:07:37 2016 done: Tue Nov 8 05:07:37 2016 Total Scan time: 3.610 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]