Result of FASTA (omim) for
pFN21AB3692
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3692, 128 aa
1>>>pF1KB3692 128 - 128 aa - 128 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2798+/-0.000329; mu= 11.0839+/- 0.020
mean_var=74.4435+/-14.904, 0's: 0 Z-trim(116.7): 35 B-trim: 0 in 0/50
Lambda= 0.148649
statistics sampled from 28030 (28065) to 28030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.329), width: 16
Scan time: 4.850
The best scores are: opt bits E(85289)
NP_976074 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 907 203.1 1e-52
NP_001120699 (OMIM: 107271,612300) CD59 glycoprote ( 128) 907 203.1 1e-52
NP_001120698 (OMIM: 107271,612300) CD59 glycoprote ( 128) 907 203.1 1e-52
NP_001120695 (OMIM: 107271,612300) CD59 glycoprote ( 128) 907 203.1 1e-52
NP_976075 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 907 203.1 1e-52
NP_000602 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 907 203.1 1e-52
NP_001120697 (OMIM: 107271,612300) CD59 glycoprote ( 128) 907 203.1 1e-52
NP_976076 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 907 203.1 1e-52
NP_065160 (OMIM: 248300,606119) secreted Ly-6/uPAR ( 103) 140 38.5 0.0028
NP_803430 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 139 38.3 0.0036
NP_803429 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 139 38.3 0.0036
NP_803252 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 139 38.3 0.0036
>>NP_976074 (OMIM: 107271,612300) CD59 glycoprotein prep (128 aa)
initn: 907 init1: 907 opt: 907 Z-score: 1067.3 bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
70 80 90 100 110 120
pF1KB3 AAAWSLHP
::::::::
NP_976 AAAWSLHP
>>NP_001120699 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa)
initn: 907 init1: 907 opt: 907 Z-score: 1067.3 bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
70 80 90 100 110 120
pF1KB3 AAAWSLHP
::::::::
NP_001 AAAWSLHP
>>NP_001120698 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa)
initn: 907 init1: 907 opt: 907 Z-score: 1067.3 bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
70 80 90 100 110 120
pF1KB3 AAAWSLHP
::::::::
NP_001 AAAWSLHP
>>NP_001120695 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa)
initn: 907 init1: 907 opt: 907 Z-score: 1067.3 bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
70 80 90 100 110 120
pF1KB3 AAAWSLHP
::::::::
NP_001 AAAWSLHP
>>NP_976075 (OMIM: 107271,612300) CD59 glycoprotein prep (128 aa)
initn: 907 init1: 907 opt: 907 Z-score: 1067.3 bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
70 80 90 100 110 120
pF1KB3 AAAWSLHP
::::::::
NP_976 AAAWSLHP
>>NP_000602 (OMIM: 107271,612300) CD59 glycoprotein prep (128 aa)
initn: 907 init1: 907 opt: 907 Z-score: 1067.3 bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
70 80 90 100 110 120
pF1KB3 AAAWSLHP
::::::::
NP_000 AAAWSLHP
>>NP_001120697 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa)
initn: 907 init1: 907 opt: 907 Z-score: 1067.3 bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
70 80 90 100 110 120
pF1KB3 AAAWSLHP
::::::::
NP_001 AAAWSLHP
>>NP_976076 (OMIM: 107271,612300) CD59 glycoprotein prep (128 aa)
initn: 907 init1: 907 opt: 907 Z-score: 1067.3 bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
70 80 90 100 110 120
pF1KB3 AAAWSLHP
::::::::
NP_976 AAAWSLHP
>>NP_065160 (OMIM: 248300,606119) secreted Ly-6/uPAR-rel (103 aa)
initn: 128 init1: 71 opt: 140 Z-score: 179.7 bits: 38.5 E(85289): 0.0028
Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (12-95:9-100)
10 20 30 40 50
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL
:::: : :..:.::.: .: .:.:.: . :. . ::. : . .
NP_065 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT
.. .:. . :. . :.: . .: . :: .::::
NP_065 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL
60 70 80 90 100
120
pF1KB3 VLLLVTPFLAAAWSLHP
>>NP_803430 (OMIM: 606110) ly-6/neurotoxin-like protein (116 aa)
initn: 134 init1: 60 opt: 139 Z-score: 177.8 bits: 38.3 E(85289): 0.0036
Smith-Waterman score: 139; 26.0% identity (52.8% similar) in 123 aa overlap (9-126:4-115)
10 20 30 40 50
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAG---
:. :.::. . ...:.:. : .: . . : . :. :..
NP_803 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTP
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 --LQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLL
..: ..: .: :. : .. : ::. :::: ::.:. ..: :
NP_803 TRMKVSKSC--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLAL
60 70 80 90 100
120
pF1KB3 VTPFLAAAWSLHP
. .::. :.:
NP_803 APILLATLWGLL
110
128 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:19:35 2016 done: Sat Nov 5 05:19:36 2016
Total Scan time: 4.850 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]