FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3692, 128 aa
  1>>>pF1KB3692 128 - 128 aa - 128 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3281+/-0.000757; mu= 11.0309+/- 0.045
 mean_var=77.7836+/-15.554, 0's: 0 Z-trim(110.3): 22  B-trim: 0 in 0/50
 Lambda= 0.145422
 statistics sampled from 11484 (11497) to 11484 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.353), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS7886.1 CD59 gene_id:966|Hs108|chr11            ( 128)  907 198.9 7.2e-52


>>CCDS7886.1 CD59 gene_id:966|Hs108|chr11                 (128 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1044.7  bits: 198.9 E(32554): 7.2e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
               70        80        90       100       110       120

               
pF1KB3 AAAWSLHP
       ::::::::
CCDS78 AAAWSLHP
               




128 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:19:34 2016 done: Sat Nov  5 05:19:35 2016
 Total Scan time:  1.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]