FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1449, 400 aa 1>>>pF1KE1449 400 - 400 aa - 400 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.1911+/-0.0011; mu= -10.6531+/- 0.066 mean_var=506.5136+/-107.339, 0's: 0 Z-trim(116.1): 19 B-trim: 434 in 1/54 Lambda= 0.056987 statistics sampled from 16715 (16730) to 16715 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.514), width: 16 Scan time: 3.100 The best scores are: opt bits E(32554) CCDS2939.1 TFG gene_id:10342|Hs108|chr3 ( 400) 2727 238.2 1.1e-62 CCDS56266.1 TFG gene_id:10342|Hs108|chr3 ( 396) 2683 234.5 1.3e-61 >>CCDS2939.1 TFG gene_id:10342|Hs108|chr3 (400 aa) initn: 2727 init1: 2727 opt: 2727 Z-score: 1239.2 bits: 238.2 E(32554): 1.1e-62 Smith-Waterman score: 2727; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400) 10 20 30 40 50 60 pF1KE1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 DSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 VMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQIE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASYSQQTGPQQPQQFQGYGQQPTSQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 GQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASYSQQTGPQQPQQFQGYGQQPTSQAP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 APAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 APAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQPR 310 320 330 340 350 360 370 380 390 400 pF1KE1 PGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR :::::::::::::::::::::::::::::::::::::::: CCDS29 PGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 370 380 390 400 >>CCDS56266.1 TFG gene_id:10342|Hs108|chr3 (396 aa) initn: 1620 init1: 1620 opt: 2683 Z-score: 1219.7 bits: 234.5 E(32554): 1.3e-61 Smith-Waterman score: 2683; 99.0% identity (99.0% similar) in 400 aa overlap (1-400:1-396) 10 20 30 40 50 60 pF1KE1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 DSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 VMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQ-- 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 GQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASYSQQTGPQQPQQFQGYGQQPTSQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 --MYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASYSQQTGPQQPQQFQGYGQQPTSQAP 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 APAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 APAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQPR 300 310 320 330 340 350 370 380 390 400 pF1KE1 PGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR :::::::::::::::::::::::::::::::::::::::: CCDS56 PGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 360 370 380 390 400 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:50:14 2016 done: Mon Nov 7 02:50:15 2016 Total Scan time: 3.100 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]