FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5407, 331 aa 1>>>pF1KE5407 331 - 331 aa - 331 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3109+/-0.00032; mu= 16.2331+/- 0.020 mean_var=68.5819+/-13.495, 0's: 0 Z-trim(116.0): 7 B-trim: 32 in 1/58 Lambda= 0.154871 statistics sampled from 26909 (26916) to 26909 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.316), width: 16 Scan time: 7.000 The best scores are: opt bits E(85289) NP_056494 (OMIM: 610727) probable tRNA pseudouridi ( 331) 2201 500.5 2e-141 NP_001316791 (OMIM: 610727) probable tRNA pseudour ( 275) 1816 414.4 1.4e-115 NP_001316790 (OMIM: 610727) probable tRNA pseudour ( 287) 1666 380.9 1.7e-105 NP_001316792 (OMIM: 610727) probable tRNA pseudour ( 227) 1498 343.3 2.8e-94 NP_631908 (OMIM: 610726) probable tRNA pseudouridi ( 349) 382 94.1 4.7e-19 >>NP_056494 (OMIM: 610727) probable tRNA pseudouridine s (331 aa) initn: 2201 init1: 2201 opt: 2201 Z-score: 2659.9 bits: 500.5 E(85289): 2e-141 Smith-Waterman score: 2201; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331) 10 20 30 40 50 60 pF1KE5 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP 250 260 270 280 290 300 310 320 330 pF1KE5 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ ::::::::::::::::::::::::::::::: NP_056 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ 310 320 330 >>NP_001316791 (OMIM: 610727) probable tRNA pseudouridin (275 aa) initn: 1816 init1: 1816 opt: 1816 Z-score: 2196.2 bits: 414.4 E(85289): 1.4e-115 Smith-Waterman score: 1816; 100.0% identity (100.0% similar) in 275 aa overlap (57-331:1-275) 30 40 50 60 70 80 pF1KE5 RDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGSEEKELTLTATSVPSFINHPLVCGPAF :::::::::::::::::::::::::::::: NP_001 MEGSEEKELTLTATSVPSFINHPLVCGPAF 10 20 30 90 100 110 120 130 140 pF1KE5 AHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLLGKATDDFREDGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLLGKATDDFREDGR 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE5 LVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPM 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE5 LITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQVRRTRDGFFTLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQVRRTRDGFFTLD 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE5 SALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLDTKQLPSPGWSWDSQGPSSTLGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLDTKQLPSPGWSWDSQGPSSTLGLE 220 230 240 250 260 270 330 pF1KE5 RGAGQ ::::: NP_001 RGAGQ >>NP_001316790 (OMIM: 610727) probable tRNA pseudouridin (287 aa) initn: 1896 init1: 1666 opt: 1666 Z-score: 2014.8 bits: 380.9 E(85289): 1.7e-105 Smith-Waterman score: 1812; 86.7% identity (86.7% similar) in 331 aa overlap (1-331:1-287) 10 20 30 40 50 60 pF1KE5 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS :::::::::::::::::::::::::::::::::::: NP_001 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLK------------------------ 10 20 30 70 80 90 100 110 120 pF1KE5 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY :::::::::::::::::::::::::::::::::::::::: NP_001 --------------------VCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY 40 50 60 70 130 140 150 160 170 180 pF1KE5 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS 80 90 100 110 120 130 190 200 210 220 230 240 pF1KE5 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH 140 150 160 170 180 190 250 260 270 280 290 300 pF1KE5 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP 200 210 220 230 240 250 310 320 330 pF1KE5 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ ::::::::::::::::::::::::::::::: NP_001 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ 260 270 280 >>NP_001316792 (OMIM: 610727) probable tRNA pseudouridin (227 aa) initn: 1498 init1: 1498 opt: 1498 Z-score: 1813.5 bits: 343.3 E(85289): 2.8e-94 Smith-Waterman score: 1498; 99.6% identity (100.0% similar) in 227 aa overlap (105-331:1-227) 80 90 100 110 120 130 pF1KE5 FINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLL .::::::::::::::::::::::::::::: NP_001 MVLGVGHGCRLLTDMYNAHLTKDYTVRGLL 10 20 30 140 150 160 170 180 190 pF1KE5 GKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAV 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 RGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQ 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE5 VRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLDTKQLPSPGWSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLDTKQLPSPGWSW 160 170 180 190 200 210 320 330 pF1KE5 DSQGPSSTLGLERGAGQ ::::::::::::::::: NP_001 DSQGPSSTLGLERGAGQ 220 >>NP_631908 (OMIM: 610726) probable tRNA pseudouridine s (349 aa) initn: 253 init1: 146 opt: 382 Z-score: 463.1 bits: 94.1 E(85289): 4.7e-19 Smith-Waterman score: 382; 34.1% identity (61.0% similar) in 223 aa overlap (89-309:112-330) 60 70 80 90 100 110 pF1KE5 GSEEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTD ::.: : ::. : ::::.:.: : ..::. NP_631 SAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTS 90 100 110 120 130 140 120 130 140 150 160 170 pF1KE5 MYNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVM : .. .: ::. : :::::: . ::..:. ::..:.: .. :: . :. ... . NP_631 MLSG--SKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPL 150 160 170 180 190 180 190 200 210 220 230 pF1KE5 YSNLDLKTQEAYEMAVRG-LIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRK :: : :. . :: ... :. . .: : :: : :.:.: .:. NP_631 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFY--IRS 200 210 220 230 240 250 240 250 260 270 280 290 pF1KE5 LVHEIGLELKTTAVCTQVRRTRDGFFTLDS-ALLRTQWDLTNIQDAIRAATPQVAAELEK :: .:: ::.. : .. ::..: :::. :: . .: . .: .... . ::: NP_631 LVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLFPAELAL 260 270 280 290 300 310 300 310 320 330 pF1KE5 SLSPGLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ . : ...:. : NP_631 KKSKPESNEQVLSCEYITLNEPKREDDVIKTC 320 330 340 331 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:26:19 2016 done: Tue Nov 8 00:26:20 2016 Total Scan time: 7.000 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]