FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5407, 331 aa 1>>>pF1KE5407 331 - 331 aa - 331 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3598+/-0.000743; mu= 16.1009+/- 0.045 mean_var=69.0419+/-13.989, 0's: 0 Z-trim(109.2): 7 B-trim: 0 in 0/52 Lambda= 0.154354 statistics sampled from 10699 (10701) to 10699 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.329), width: 16 Scan time: 2.580 The best scores are: opt bits E(32554) CCDS6897.1 TRUB2 gene_id:26995|Hs108|chr9 ( 331) 2201 498.8 2.5e-141 CCDS7591.1 TRUB1 gene_id:142940|Hs108|chr10 ( 349) 382 93.7 2.3e-19 >>CCDS6897.1 TRUB2 gene_id:26995|Hs108|chr9 (331 aa) initn: 2201 init1: 2201 opt: 2201 Z-score: 2650.8 bits: 498.8 E(32554): 2.5e-141 Smith-Waterman score: 2201; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331) 10 20 30 40 50 60 pF1KE5 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP 250 260 270 280 290 300 310 320 330 pF1KE5 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ ::::::::::::::::::::::::::::::: CCDS68 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ 310 320 330 >>CCDS7591.1 TRUB1 gene_id:142940|Hs108|chr10 (349 aa) initn: 253 init1: 146 opt: 382 Z-score: 461.3 bits: 93.7 E(32554): 2.3e-19 Smith-Waterman score: 382; 34.1% identity (61.0% similar) in 223 aa overlap (89-309:112-330) 60 70 80 90 100 110 pF1KE5 GSEEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTD ::.: : ::. : ::::.:.: : ..::. CCDS75 SAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTS 90 100 110 120 130 140 120 130 140 150 160 170 pF1KE5 MYNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVM : .. .: ::. : :::::: . ::..:. ::..:.: .. :: . :. ... . CCDS75 MLSG--SKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPL 150 160 170 180 190 180 190 200 210 220 230 pF1KE5 YSNLDLKTQEAYEMAVRG-LIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRK :: : :. . :: ... :. . .: : :: : :.:.: .:. CCDS75 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFY--IRS 200 210 220 230 240 250 240 250 260 270 280 290 pF1KE5 LVHEIGLELKTTAVCTQVRRTRDGFFTLDS-ALLRTQWDLTNIQDAIRAATPQVAAELEK :: .:: ::.. : .. ::..: :::. :: . .: . .: .... . ::: CCDS75 LVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLFPAELAL 260 270 280 290 300 310 300 310 320 330 pF1KE5 SLSPGLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ . : ...:. : CCDS75 KKSKPESNEQVLSCEYITLNEPKREDDVIKTC 320 330 340 331 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:26:18 2016 done: Tue Nov 8 00:26:18 2016 Total Scan time: 2.580 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]