FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6124, 154 aa 1>>>pF1KE6124 154 - 154 aa - 154 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6492+/-0.000649; mu= 3.3361+/- 0.039 mean_var=149.2356+/-30.005, 0's: 0 Z-trim(116.8): 5 B-trim: 0 in 0/52 Lambda= 0.104988 statistics sampled from 17476 (17480) to 17476 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.537), width: 16 Scan time: 1.940 The best scores are: opt bits E(32554) CCDS45771.1 HN1 gene_id:51155|Hs108|chr17 ( 154) 1030 165.9 8.7e-42 CCDS45772.1 HN1 gene_id:51155|Hs108|chr17 ( 108) 720 118.9 8.9e-28 CCDS32729.1 HN1 gene_id:51155|Hs108|chr17 ( 181) 649 108.3 2.3e-24 >>CCDS45771.1 HN1 gene_id:51155|Hs108|chr17 (154 aa) initn: 1030 init1: 1030 opt: 1030 Z-score: 863.7 bits: 165.9 E(32554): 8.7e-42 Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE6 MTTTTTFKGVDPNSRNSSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MTTTTTFKGVDPNSRNSSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 SWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSE 70 80 90 100 110 120 130 140 150 pF1KE6 EKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG :::::::::::::::::::::::::::::::::: CCDS45 EKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG 130 140 150 >>CCDS45772.1 HN1 gene_id:51155|Hs108|chr17 (108 aa) initn: 720 init1: 720 opt: 720 Z-score: 612.2 bits: 118.9 E(32554): 8.9e-28 Smith-Waterman score: 720; 100.0% identity (100.0% similar) in 108 aa overlap (47-154:1-108) 20 30 40 50 60 70 pF1KE6 SSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQASWAKSAGAKSSGGRED :::::::::::::::::::::::::::::: CCDS45 MASNIFGTPEENQASWAKSAGAKSSGGRED 10 20 30 80 90 100 110 120 130 pF1KE6 LESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPA 40 50 60 70 80 90 140 150 pF1KE6 PVPSRRNPPGGKSSLVLG :::::::::::::::::: CCDS45 PVPSRRNPPGGKSSLVLG 100 >>CCDS32729.1 HN1 gene_id:51155|Hs108|chr17 (181 aa) initn: 649 init1: 649 opt: 649 Z-score: 550.8 bits: 108.3 E(32554): 2.3e-24 Smith-Waterman score: 649; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99) 10 20 30 40 50 60 pF1KE6 MTTTTTFKGVDPNSRNSSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MTTTTTFKGVDPNSRNSSRVLRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSE ::::::::::::::::::::::::::::::::::::::: CCDS32 SWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKKMWTQTCQAAWGRVKRSPCLL 70 80 90 100 110 120 130 140 150 pF1KE6 EKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG CCDS32 RLCPARWPRPQCHPEEIPLAASPASSWVSSDCPERCRSVCFLHACELHNLSLTVHLLDLF 130 140 150 160 170 180 154 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:39:40 2016 done: Tue Nov 8 09:39:40 2016 Total Scan time: 1.940 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]