Result of FASTA (omim) for pFN21AE2278
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2278, 342 aa
  1>>>pF1KE2278 342 - 342 aa - 342 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0112+/-0.000419; mu= 12.3517+/- 0.026
 mean_var=84.5454+/-17.392, 0's: 0 Z-trim(111.4): 127  B-trim: 0 in 0/52
 Lambda= 0.139486
 statistics sampled from 19858 (19986) to 19858 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.234), width:  16
 Scan time:  6.970

The best scores are:                                      opt bits E(85289)
NP_005819 (OMIM: 605973) DDB1- and CUL4-associated ( 342) 2393 491.8 9.1e-139
NP_113673 (OMIM: 610597) glutamate-rich WD repeat- ( 446)  196 49.7 1.4e-05
NP_001128728 (OMIM: 602923) histone-binding protei ( 390)  155 41.4  0.0038
NP_001287673 (OMIM: 610257) protein transport prot (1067)  161 42.9  0.0038
NP_001070674 (OMIM: 610257) protein transport prot (1106)  161 42.9   0.004
NP_001128727 (OMIM: 602923) histone-binding protei ( 424)  155 41.5  0.0041
NP_005601 (OMIM: 602923) histone-binding protein R ( 425)  155 41.5  0.0041
NP_001287674 (OMIM: 610257) protein transport prot (1166)  161 42.9  0.0041
NP_001177978 (OMIM: 610257) protein transport prot (1200)  161 42.9  0.0042
NP_056305 (OMIM: 610258) protein transport protein (1179)  156 41.9  0.0084


>>NP_005819 (OMIM: 605973) DDB1- and CUL4-associated fac  (342 aa)
 initn: 2393 init1: 2393 opt: 2393  Z-score: 2612.3  bits: 491.8 E(85289): 9.1e-139
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KE2 MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 CRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 CRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 APLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 APLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 AMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMP
              250       260       270       280       290       300

              310       320       330       340  
pF1KE2 RAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV
       ::::::::::::::::::::::::::::::::::::::::::
NP_005 RAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV
              310       320       330       340  

>>NP_113673 (OMIM: 610597) glutamate-rich WD repeat-cont  (446 aa)
 initn: 213 init1: 101 opt: 196  Z-score: 221.2  bits: 49.7 E(85289): 1.4e-05
Smith-Waterman score: 205; 24.4% identity (52.6% similar) in 312 aa overlap (51-326:121-427)

               30        40        50        60        70        80
pF1KE2 AMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDT
                                     : :::  :   ..  ..  :  .:  .:  
NP_113 AGTQAESAQSNRLMMLRMHNLHGTKPPPSEGSDEEEEEEDEEDEEERK-PQLELAMVPHY
              100       110       120       130        140         

               90          100        110       120       130      
pF1KE2 KGVYPDLLATSGD--YLRVW-RVGETET-RLECLLNNNKNSDFCAPLTSFDWNEVDPYL-
        :.    ..  :.     :: . :..:.  :. ::.  .. .  : .   .  .. : . 
NP_113 GGINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQALAAFLRDEQAQMKPIFS
     150       160       170       180       190       200         

              140        150       160              170       180  
pF1KE2 ----LGTS-SIDTTCTIWG-LETGQVLGRVNLV------SGHV-KTQLIAHDKEVYDIAF
           .: . ..: .  . : : ::.    ..:       : :: .  ...: . : :. .
NP_113 FAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVEDLQW
     210       220       230       240       250       260         

            190       200       210       220         230       240
pF1KE2 SRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHP--LLRLCWNKQDPNYLATM
       : . .   .::: .::.:.:..:.:    .. .      :   .  . :....: .: . 
NP_113 SPTEN--TVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWSRREP-FLLSG
     270         280       290       300       310       320       

              250         260       270       280       290        
pF1KE2 AMDGMEVVILDVRV--PCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWD--I
       . ::  . : :.:     .::: ...: : :... : :..:  . ... :::   ::  .
NP_113 GDDGA-LKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAV
        330        340       350       360       370       380     

        300                   310       320       330       340    
pF1KE2 QQMPRA--IE-DPILA---------YTAEGEINNVQWASTQPDWIAICYNNCLEILRV  
       .. :.:  .: :: ::         . .: :.....:    :                  
NP_113 ERDPEAGDVEADPGLADLPQQLLFVHQGETELKELHWHPQCPGLLVSTALSGFTIFRTIS
         390       400       410       420       430       440     

NP_113 V
        

>>NP_001128728 (OMIM: 602923) histone-binding protein RB  (390 aa)
 initn: 223 init1: 130 opt: 155  Z-score: 177.4  bits: 41.4 E(85289): 0.0038
Smith-Waterman score: 158; 28.4% identity (57.8% similar) in 102 aa overlap (232-321:100-200)

             210       220       230       240       250           
pF1KE2 RMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATMAMDGMEVVILD-VRVP-----
                                     :.:  .::    . .:...: .. :     
NP_001 FGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIAT-KTPSSDVLVFDYTKHPSKPDP
      70        80        90       100        110       120        

            260       270       280       290       300         310
pF1KE2 ---CTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRA--IEDPILAY
          :.:  :: .:.    :..: :. : :. .:.:::   .:::. .:.   . :    .
NP_001 SGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIF
      130       140       150       160       170       180        

               320       330       340                             
pF1KE2 TAEGEI-NNVQWASTQPDWIAICYNNCLEILRV                           
       :..  . ..:.:                                                
NP_001 TGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNP
      190       200       210       220       230       240        

>>NP_001287673 (OMIM: 610257) protein transport protein   (1067 aa)
 initn:  83 init1:  73 opt: 161  Z-score: 177.4  bits: 42.9 E(85289): 0.0038
Smith-Waterman score: 163; 21.5% identity (55.3% similar) in 275 aa overlap (76-332:14-279)

          50        60        70        80        90       100     
pF1KE2 KVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETET
                                     : :  .  .:  :::. .  ..  .  :..
NP_001                  MKLKEVDRTAMQAWSPAQN--HPIYLATGTSAQQLDATFSTNA
                                10          20        30        40 

         110           120        130         140       150        
pF1KE2 RLECL-LN-NNKNSDF--CAPLTS-FDWNEV--DPYLLGTSSIDTTCTIWGLETGQVL--
        :: . :. .. . :.  :: ..:   ....   :: . ...  .   : : :.:...  
NP_001 SLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILY
              50        60        70        80        90       100 

        160       170       180        190       200       210     
pF1KE2 GRVNLVSGHVKTQLIAHDKEVYDI-AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTII
          ....:  .. .  .::..  . :..      .. :: . .. . ..:: ..  .: .
NP_001 DPSKIIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNF--ATPM
             110       120       130       140       150           

         220          230       240       250       260         270
pF1KE2 YEDPQHHPLLRL-C--WNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNH--RACVN
           . .:   . :  ::.:  . ::. . .: .... :.:    :. ....:  :   .
NP_001 TPGAKTQPPEDISCIAWNRQVQHILASASPSG-RATVWDLR-KNEPIIKVSDHSNRMHCS
     160       170       180       190         200       210       

              280        290         300       310       320       
pF1KE2 GIAWAPHSSCHICTAA-DDHQALI--WDIQQMPRAIEDPILAYTAEGEINNVQWASTQPD
       :.:: :  . ..  :. ::.  .:  ::..     ..  .:   :.: :  . :. ..:.
NP_001 GLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLR--VLENHARG-ILAIAWSMADPE
       220       230       240       250         260        270    

       330       340                                               
pF1KE2 WIAICYNNCLEILRV                                             
        .  :                                                       
NP_001 LLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIM
          280       290       300       310       320       330    

>>NP_001070674 (OMIM: 610257) protein transport protein   (1106 aa)
 initn:  83 init1:  73 opt: 161  Z-score: 177.2  bits: 42.9 E(85289): 0.004
Smith-Waterman score: 163; 21.5% identity (55.3% similar) in 275 aa overlap (76-332:14-279)

          50        60        70        80        90       100     
pF1KE2 KVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETET
                                     : :  .  .:  :::. .  ..  .  :..
NP_001                  MKLKEVDRTAMQAWSPAQN--HPIYLATGTSAQQLDATFSTNA
                                10          20        30        40 

         110           120        130         140       150        
pF1KE2 RLECL-LN-NNKNSDF--CAPLTS-FDWNEV--DPYLLGTSSIDTTCTIWGLETGQVL--
        :: . :. .. . :.  :: ..:   ....   :: . ...  .   : : :.:...  
NP_001 SLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILY
              50        60        70        80        90       100 

        160       170       180        190       200       210     
pF1KE2 GRVNLVSGHVKTQLIAHDKEVYDI-AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTII
          ....:  .. .  .::..  . :..      .. :: . .. . ..:: ..  .: .
NP_001 DPSKIIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNF--ATPM
             110       120       130       140       150           

         220          230       240       250       260         270
pF1KE2 YEDPQHHPLLRL-C--WNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNH--RACVN
           . .:   . :  ::.:  . ::. . .: .... :.:    :. ....:  :   .
NP_001 TPGAKTQPPEDISCIAWNRQVQHILASASPSG-RATVWDLR-KNEPIIKVSDHSNRMHCS
     160       170       180       190         200       210       

              280        290         300       310       320       
pF1KE2 GIAWAPHSSCHICTAA-DDHQALI--WDIQQMPRAIEDPILAYTAEGEINNVQWASTQPD
       :.:: :  . ..  :. ::.  .:  ::..     ..  .:   :.: :  . :. ..:.
NP_001 GLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLR--VLENHARG-ILAIAWSMADPE
       220       230       240       250         260        270    

       330       340                                               
pF1KE2 WIAICYNNCLEILRV                                             
        .  :                                                       
NP_001 LLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIM
          280       290       300       310       320       330    

>>NP_001128727 (OMIM: 602923) histone-binding protein RB  (424 aa)
 initn: 223 init1: 130 opt: 155  Z-score: 176.9  bits: 41.5 E(85289): 0.0041
Smith-Waterman score: 158; 28.4% identity (57.8% similar) in 102 aa overlap (232-321:134-234)

             210       220       230       240       250           
pF1KE2 RMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATMAMDGMEVVILD-VRVP-----
                                     :.:  .::    . .:...: .. :     
NP_001 FGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIAT-KTPSSDVLVFDYTKHPSKPDP
           110       120       130       140        150       160  

            260       270       280       290       300         310
pF1KE2 ---CTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRA--IEDPILAY
          :.:  :: .:.    :..: :. : :. .:.:::   .:::. .:.   . :    .
NP_001 SGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIF
            170       180       190       200       210       220  

               320       330       340                             
pF1KE2 TAEGEI-NNVQWASTQPDWIAICYNNCLEILRV                           
       :..  . ..:.:                                                
NP_001 TGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNP
            230       240       250       260       270       280  

>>NP_005601 (OMIM: 602923) histone-binding protein RBBP4  (425 aa)
 initn: 223 init1: 130 opt: 155  Z-score: 176.9  bits: 41.5 E(85289): 0.0041
Smith-Waterman score: 158; 28.4% identity (57.8% similar) in 102 aa overlap (232-321:135-235)

             210       220       230       240       250           
pF1KE2 RMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATMAMDGMEVVILD-VRVP-----
                                     :.:  .::    . .:...: .. :     
NP_005 FGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIAT-KTPSSDVLVFDYTKHPSKPDP
          110       120       130       140        150       160   

            260       270       280       290       300         310
pF1KE2 ---CTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRA--IEDPILAY
          :.:  :: .:.    :..: :. : :. .:.:::   .:::. .:.   . :    .
NP_005 SGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIF
           170       180       190       200       210       220   

               320       330       340                             
pF1KE2 TAEGEI-NNVQWASTQPDWIAICYNNCLEILRV                           
       :..  . ..:.:                                                
NP_005 TGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNP
           230       240       250       260       270       280   

>>NP_001287674 (OMIM: 610257) protein transport protein   (1166 aa)
 initn:  83 init1:  73 opt: 161  Z-score: 176.8  bits: 42.9 E(85289): 0.0041
Smith-Waterman score: 163; 21.5% identity (55.3% similar) in 275 aa overlap (76-332:14-279)

          50        60        70        80        90       100     
pF1KE2 KVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETET
                                     : :  .  .:  :::. .  ..  .  :..
NP_001                  MKLKEVDRTAMQAWSPAQN--HPIYLATGTSAQQLDATFSTNA
                                10          20        30        40 

         110           120        130         140       150        
pF1KE2 RLECL-LN-NNKNSDF--CAPLTS-FDWNEV--DPYLLGTSSIDTTCTIWGLETGQVL--
        :: . :. .. . :.  :: ..:   ....   :: . ...  .   : : :.:...  
NP_001 SLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILY
              50        60        70        80        90       100 

        160       170       180        190       200       210     
pF1KE2 GRVNLVSGHVKTQLIAHDKEVYDI-AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTII
          ....:  .. .  .::..  . :..      .. :: . .. . ..:: ..  .: .
NP_001 DPSKIIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNF--ATPM
             110       120       130       140       150           

         220          230       240       250       260         270
pF1KE2 YEDPQHHPLLRL-C--WNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNH--RACVN
           . .:   . :  ::.:  . ::. . .: .... :.:    :. ....:  :   .
NP_001 TPGAKTQPPEDISCIAWNRQVQHILASASPSG-RATVWDLR-KNEPIIKVSDHSNRMHCS
     160       170       180       190         200       210       

              280        290         300       310       320       
pF1KE2 GIAWAPHSSCHICTAA-DDHQALI--WDIQQMPRAIEDPILAYTAEGEINNVQWASTQPD
       :.:: :  . ..  :. ::.  .:  ::..     ..  .:   :.: :  . :. ..:.
NP_001 GLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLR--VLENHARG-ILAIAWSMADPE
       220       230       240       250         260        270    

       330       340                                               
pF1KE2 WIAICYNNCLEILRV                                             
        .  :                                                       
NP_001 LLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIM
          280       290       300       310       320       330    

>>NP_001177978 (OMIM: 610257) protein transport protein   (1200 aa)
 initn:  83 init1:  73 opt: 161  Z-score: 176.6  bits: 42.9 E(85289): 0.0042
Smith-Waterman score: 161; 20.4% identity (55.0% similar) in 211 aa overlap (133-332:71-274)

            110       120       130       140       150         160
pF1KE2 TETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVL--GRVN
                                     :: . ...  .   : : :.:...     .
NP_001 FELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSK
               50        60        70        80        90       100

              170       180        190       200       210         
pF1KE2 LVSGHVKTQLIAHDKEVYDI-AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDP
       ...:  .. .  .::..  . :..      .. :: . .. . ..:: ..  .: .    
NP_001 IIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNF--ATPMTPGA
              110       120       130       140       150          

     220          230       240       250       260         270    
pF1KE2 QHHPLLRL-C--WNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNH--RACVNGIAW
       . .:   . :  ::.:  . ::. . .: .... :.:    :. ....:  :   .:.::
NP_001 KTQPPEDISCIAWNRQVQHILASASPSG-RATVWDLR-KNEPIIKVSDHSNRMHCSGLAW
      160       170       180        190        200       210      

          280       290          300       310       320       330 
pF1KE2 APHSSCHICTAADDHQ---ALIWDIQQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAI
        :  . ..  :..: .     .::..     ..  .:   :.: :  . :. ..:. .  
NP_001 HPDVATQMVLASEDDRLPVIQMWDLRFASSPLR--VLENHARG-ILAIAWSMADPELLLS
        220       230       240         250        260       270   

             340                                                   
pF1KE2 CYNNCLEILRV                                                 
       :                                                           
NP_001 CGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGST
           280       290       300       310       320       330   

>>NP_056305 (OMIM: 610258) protein transport protein Sec  (1179 aa)
 initn:  66 init1:  66 opt: 156  Z-score: 171.3  bits: 41.9 E(85289): 0.0084
Smith-Waterman score: 157; 22.9% identity (50.9% similar) in 275 aa overlap (76-327:14-272)

          50        60        70        80        90       100     
pF1KE2 KVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETET
                                     : : ..  ::  :::. .  ..     :. 
NP_056                  MKLKELERPAVQAWSPASQ--YPLYLATGTSAQQLDSSFSTNG
                                10          20        30        40 

         110              120          130       140       150     
pF1KE2 RLECLLNNNKNSDF-------CAPLTSFD---WNEVDPYLLGTSSIDTTCTIWGLETGQ-
        :: .  . .. ..        . :. :    :.     :: .:..     . : ..:. 
NP_056 TLEIFEVDFRDPSLDLKHRGVLSALSRFHKLVWGSFGSGLLESSGV----IVGGGDNGML
              50        60        70        80            90       

          160       170           180       190       200       210
pF1KE2 VLGRVNLVSGHVKTQLIA----HDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLE
       .:  :. . .  :  .::    :   :  . ..   :  ...:: ..:. . ..:: .:.
NP_056 ILYNVTHILSSGKEPVIAQKQKHTGAVRALDLNPFQG--NLLASGASDSEIFIWDLNNLN
       100       110       120       130         140       150     

              220         230       240       250       260        
pF1KE2 HSTIIYEDPQHHP--LLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNH--R
           .    :. :  .  : ::.:  . :..   .: ..:. :.:    :. ....:  :
NP_056 VPMTLGSKSQQPPEDIKALSWNRQAQHILSSAHPSG-KAVVWDLR-KNEPIIKVSDHSNR
         160       170       180       190         200       210   

        270       280         290         300       310       320  
pF1KE2 ACVNGIAWAPHSSCHI--CTAADDHQALI--WDIQQMPRAIEDPILAYTAEGEINNVQWA
          .:.:: :  . ..  :.  ::.  .:  ::..     ..  .:   ..: : .:.: 
NP_056 MHCSGLAWHPDIATQLVLCSE-DDRLPVIQLWDLRFASSPLK--VLESHSRG-ILSVSW-
           220       230        240       250         260          

            330       340                                          
pF1KE2 STQPDWIAICYNNCLEILRV                                        
        .: :                                                       
NP_056 -SQADAELLLTSAKDSQILCRNLGSSEVVYKLPTQSSWCFDVQWCPRDPSVFSAASFNGW
       270       280       290       300       310       320       




342 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:52:17 2016 done: Mon Nov  7 02:52:18 2016
 Total Scan time:  6.970 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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