FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2278, 342 aa
  1>>>pF1KE2278 342 - 342 aa - 342 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3646+/- 0.001; mu= 9.9918+/- 0.059
 mean_var=80.1334+/-16.469, 0's: 0 Z-trim(104.6): 64  B-trim: 0 in 0/51
 Lambda= 0.143274
 statistics sampled from 7939 (7994) to 7939 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.246), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS74127.1 DCAF7 gene_id:10238|Hs108|chr17        ( 342) 2393 504.6 4.8e-143


>>CCDS74127.1 DCAF7 gene_id:10238|Hs108|chr17             (342 aa)
 initn: 2393 init1: 2393 opt: 2393  Z-score: 2681.5  bits: 504.6 E(32554): 4.8e-143
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KE2 MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 CRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 APLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 APLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 AMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMP
              250       260       270       280       290       300

              310       320       330       340  
pF1KE2 RAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV
       ::::::::::::::::::::::::::::::::::::::::::
CCDS74 RAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV
              310       320       330       340  




342 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:52:17 2016 done: Mon Nov  7 02:52:17 2016
 Total Scan time:  2.460 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]