FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1389, 383 aa 1>>>pF1KE1389 383 - 383 aa - 383 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2823+/-0.000404; mu= 16.9379+/- 0.025 mean_var=66.1296+/-13.282, 0's: 0 Z-trim(112.4): 28 B-trim: 1061 in 1/49 Lambda= 0.157716 statistics sampled from 21323 (21347) to 21323 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.25), width: 16 Scan time: 7.790 The best scores are: opt bits E(85289) NP_001316041 (OMIM: 610497) BRCA1-A complex subuni ( 383) 2626 606.5 3.3e-173 NP_954664 (OMIM: 610497) BRCA1-A complex subunit B ( 383) 2626 606.5 3.3e-173 NP_954661 (OMIM: 610497) BRCA1-A complex subunit B ( 383) 2626 606.5 3.3e-173 NP_001316042 (OMIM: 610497) BRCA1-A complex subuni ( 415) 2497 577.2 2.4e-164 NP_004890 (OMIM: 610497) BRCA1-A complex subunit B ( 415) 2497 577.2 2.4e-164 NP_954663 (OMIM: 610497) BRCA1-A complex subunit B ( 376) 2494 576.5 3.6e-164 NP_954662 (OMIM: 610497) BRCA1-A complex subunit B ( 376) 2494 576.5 3.6e-164 NP_001248769 (OMIM: 610497) BRCA1-A complex subuni ( 379) 2489 575.3 8e-164 NP_001316044 (OMIM: 610497) BRCA1-A complex subuni ( 440) 2489 575.4 9e-164 NP_001316043 (OMIM: 610497) BRCA1-A complex subuni ( 472) 2489 575.4 9.6e-164 >>NP_001316041 (OMIM: 610497) BRCA1-A complex subunit BR (383 aa) initn: 2626 init1: 2626 opt: 2626 Z-score: 3230.5 bits: 606.5 E(85289): 3.3e-173 Smith-Waterman score: 2626; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKAYFKTFVPQFQEAAFANGKL ::::::::::::::::::::::: NP_001 RAKAYFKTFVPQFQEAAFANGKL 370 380 >>NP_954664 (OMIM: 610497) BRCA1-A complex subunit BRE i (383 aa) initn: 2626 init1: 2626 opt: 2626 Z-score: 3230.5 bits: 606.5 E(85289): 3.3e-173 Smith-Waterman score: 2626; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKAYFKTFVPQFQEAAFANGKL ::::::::::::::::::::::: NP_954 RAKAYFKTFVPQFQEAAFANGKL 370 380 >>NP_954661 (OMIM: 610497) BRCA1-A complex subunit BRE i (383 aa) initn: 2626 init1: 2626 opt: 2626 Z-score: 3230.5 bits: 606.5 E(85289): 3.3e-173 Smith-Waterman score: 2626; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKAYFKTFVPQFQEAAFANGKL ::::::::::::::::::::::: NP_954 RAKAYFKTFVPQFQEAAFANGKL 370 380 >>NP_001316042 (OMIM: 610497) BRCA1-A complex subunit BR (415 aa) initn: 2494 init1: 2494 opt: 2497 Z-score: 3071.4 bits: 577.2 E(85289): 2.4e-164 Smith-Waterman score: 2497; 95.8% identity (96.6% similar) in 385 aa overlap (1-382:1-385) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKA---YFKTFVPQFQEAAFANGKL :::. . : : ::: .: NP_001 RAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERTAQ 370 380 390 400 410 >>NP_004890 (OMIM: 610497) BRCA1-A complex subunit BRE i (415 aa) initn: 2494 init1: 2494 opt: 2497 Z-score: 3071.4 bits: 577.2 E(85289): 2.4e-164 Smith-Waterman score: 2497; 95.8% identity (96.6% similar) in 385 aa overlap (1-382:1-385) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKA---YFKTFVPQFQEAAFANGKL :::. . : : ::: .: NP_004 RAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERTAQ 370 380 390 400 410 >>NP_954663 (OMIM: 610497) BRCA1-A complex subunit BRE i (376 aa) initn: 2494 init1: 2494 opt: 2494 Z-score: 3068.3 bits: 576.5 E(85289): 3.6e-164 Smith-Waterman score: 2494; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKAYFKTFVPQFQEAAFANGKL ::: NP_954 RAKRESNRDGEESSSA 370 >>NP_954662 (OMIM: 610497) BRCA1-A complex subunit BRE i (376 aa) initn: 2494 init1: 2494 opt: 2494 Z-score: 3068.3 bits: 576.5 E(85289): 3.6e-164 Smith-Waterman score: 2494; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKAYFKTFVPQFQEAAFANGKL ::: NP_954 RAKRESNRDGEESSSA 370 >>NP_001248769 (OMIM: 610497) BRCA1-A complex subunit BR (379 aa) initn: 2489 init1: 2489 opt: 2489 Z-score: 3062.1 bits: 575.3 E(85289): 8e-164 Smith-Waterman score: 2489; 99.5% identity (100.0% similar) in 364 aa overlap (1-364:1-364) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKAYFKTFVPQFQEAAFANGKL ::.. NP_001 RANSRRQHLPMESSRKHQS 370 >>NP_001316044 (OMIM: 610497) BRCA1-A complex subunit BR (440 aa) initn: 2489 init1: 2489 opt: 2489 Z-score: 3061.2 bits: 575.4 E(85289): 9e-164 Smith-Waterman score: 2489; 98.4% identity (99.7% similar) in 368 aa overlap (1-368:1-368) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKAYFKTFVPQFQEAAFANGKL ::. .... NP_001 RANEMISSIEKPGHQLLPIQPSSQRKPLTILSACADQAAPGTECLQPSSVSWLPWGRGSR 370 380 390 400 410 420 >>NP_001316043 (OMIM: 610497) BRCA1-A complex subunit BR (472 aa) initn: 2489 init1: 2489 opt: 2489 Z-score: 3060.7 bits: 575.4 E(85289): 9.6e-164 Smith-Waterman score: 2489; 98.4% identity (99.7% similar) in 368 aa overlap (1-368:1-368) 10 20 30 40 50 60 pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 310 320 330 340 350 360 370 380 pF1KE1 RAKAYFKTFVPQFQEAAFANGKL ::. .... NP_001 RANEMISSIEKPGHQLLPIQPSSQRKPLTILSACADQAAPGTECLQPSSVSWLPWGRGSR 370 380 390 400 410 420 383 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:52:48 2016 done: Mon Nov 7 02:52:49 2016 Total Scan time: 7.790 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]