(Circular) (Six-base) MAPSORT of: pFN21AE1376.seq Check: 5905 from: 1 to: 5287 pFN21AE1376 5287 bp With 182 enzymes: SgfI * August 16, 2010 14:46 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3097 278 Size: 53 83 186 936 1561 2468 Fragments arranged by size: 2468 1561 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2630 1937 Size: 693 4594 Acc65I G'GTAC_C Cuts at: 2608 2608 Size: 5287 AclI AA'CG_TT Cuts at: 1563 3414 3787 1563 Size: 1851 373 3063 Fragments arranged by size: 3063 1851 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2039 3350 4734 5002 1632 Size: 407 1311 1384 268 1917 Fragments arranged by size: 1917 1384 1311 407 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5090 AflIII A'CryG_T Cuts at: 1203 4186 5163 1203 Size: 2983 977 1327 Fragments arranged by size: 2983 1327 977 AgeI A'CCGG_T Cuts at: 4118 4118 Size: 5287 AhdI GACnn_n'nnGTC Cuts at: 4016 4016 Size: 5287 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5287 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5287 AlwNI CAG_nnn'CTG Cuts at: 2369 3030 4602 2369 Size: 661 1572 3054 Fragments arranged by size: 3054 1572 661 ApaLI G'TGCA_C Cuts at: 3344 4500 3344 Size: 1156 4131 ApoI r'AATT_y Cuts at: 1493 2596 2822 2974 5083 1493 Size: 1103 226 152 2109 1697 Fragments arranged by size: 2109 1697 1103 226 152 AseI AT'TA_AT Cuts at: 160 1032 3841 160 Size: 872 2809 1606 Fragments arranged by size: 2809 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5287 AvaI C'yCGr_G Cuts at: 1870 1943 2612 1870 Size: 73 669 4545 Fragments arranged by size: 4545 669 73 BamHI G'GATC_C Cuts at: 2617 2984 2617 Size: 367 4920 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2069 2608 4063 618 Size: 325 217 627 282 539 1455 1842 Fragments arranged by size: 1842 1455 627 539 325 282 217 BanII G_rGCy'C Cuts at: 1391 2537 2606 1391 Size: 1146 69 4072 Fragments arranged by size: 4072 1146 69 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2542 928 Size: 971 643 3673 Fragments arranged by size: 3673 971 643 BbvCI CC'TCA_GC Cuts at: 2529 2529 Size: 5287 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3478 3512 1903 Size: 34 1541 34 3678 Fragments arranged by size: 3678 1541 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3179 4389 3179 Size: 1210 4077 BclI T'GATC_A Cuts at: 1548 1548 Size: 5287 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2246 3898 136 Size: 107 122 71 631 605 574 1652 1525 Fragments arranged by size: 1652 1525 631 605 574 122 107 71 BglII A'GATC_T Cuts at: 5282 5282 Size: 5287 BlpI GC'TnA_GC Cuts at: 2704 2704 Size: 5287 Bme1580I G_kGCm'C Cuts at: 1790 2072 3348 4504 1790 Size: 282 1276 1156 2573 Fragments arranged by size: 2573 1276 1156 282 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5287 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2068 3018 3976 Size: 416 53 83 399 24 651 950 958 Cuts at: 3976 442 Size: 1753 Fragments arranged by size: 1753 958 950 651 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5287 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2164 2164 Size: 5287 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2231 2474 3947 1239 Size: 992 243 1473 2579 Fragments arranged by size: 2579 1473 992 243 Bpu10I CC'TnA_GC Cuts at: 2059 2149 2529 2059 Size: 90 380 4817 Fragments arranged by size: 4817 380 90 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3412 4277 4575 3412 Size: 865 298 4124 Fragments arranged by size: 4124 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2366 2399 2429 2450 3950 882 Size: 617 867 33 30 21 1500 2219 Fragments arranged by size: 2219 1500 867 617 33 30 21 BsaAI yAC'GTr Cuts at: 493 1204 3078 493 Size: 711 1874 2702 Fragments arranged by size: 2702 1874 711 BsaBI GATnn'nnATC Cuts at: 5281 5281 Size: 5287 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2577 3094 3476 4111 Size: 53 83 186 936 1044 517 382 635 Cuts at: 4111 275 Size: 1451 Fragments arranged by size: 1451 1044 936 635 517 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3720 4118 4392 4539 4950 3720 Size: 398 274 147 411 4057 Fragments arranged by size: 4057 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2204 2234 1178 Size: 30 165 30 801 30 4231 Fragments arranged by size: 4231 801 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2447 1186 Size: 1261 4026 BseYI C'CCAG_C Cuts at: 2382 4490 4986 2382 Size: 2108 496 2683 Fragments arranged by size: 2683 2108 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2111 2321 2548 1163 Size: 573 375 210 227 3902 Fragments arranged by size: 3902 573 375 227 210 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2737 3498 4526 1540 Size: 275 186 736 761 1028 2301 Fragments arranged by size: 2301 1028 761 736 275 186 BsiHKAI G_wGCw'C Cuts at: 3348 3433 4504 3348 Size: 85 1071 4131 Fragments arranged by size: 4131 1071 85 BsmI GAATG_Cn' Cuts at: 2798 2891 2798 Size: 93 5194 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2072 2537 2606 3348 3433 4504 1391 Size: 399 282 465 69 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 465 399 282 85 69 BspEI T'CCGG_A Cuts at: 4950 4950 Size: 5287 BspHI T'CATG_A Cuts at: 3176 4906 3176 Size: 1730 3557 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2642 844 Size: 1798 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3174 1394 Size: 429 1351 3507 Fragments arranged by size: 3507 1351 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3782 3956 65 Size: 1183 2534 174 1396 Fragments arranged by size: 2534 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3931 4118 1700 Size: 110 2121 187 2869 Fragments arranged by size: 2869 2121 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5287 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5287 BssSI C'ACGA_G Cuts at: 3347 4359 3347 Size: 1012 4275 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5287 BstBI TT'CG_AA Cuts at: 4091 4091 Size: 5287 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5287 BstYI r'GATC_y Cuts at: 1972 2617 2984 3369 3386 4838 4924 4936 5282 Size: 645 367 385 17 1452 86 12 346 Cuts at: 5282 1972 Size: 1977 Fragments arranged by size: 1977 1452 645 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2241 2291 2538 513 Size: 552 939 237 50 247 3262 Fragments arranged by size: 3262 939 552 247 237 50 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2470 487 Size: 683 56 1244 3304 Fragments arranged by size: 3304 1244 683 56 BtsI GCAGTG_nn' Cuts at: 2342 2803 3597 3617 2342 Size: 461 794 20 4012 Fragments arranged by size: 4012 794 461 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5287 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5252 DraI TTT'AAA Cuts at: 2591 2591 Size: 5287 DraIII CAC_nnn'GTG Cuts at: 2076 2076 Size: 5287 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4294 809 Size: 507 2978 1802 Fragments arranged by size: 2978 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2157 2247 2734 Size: 54 1425 50 275 18 327 90 487 Cuts at: 2734 3623 5252 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 487 327 275 90 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2734 1537 Size: 275 922 4090 Fragments arranged by size: 4090 922 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2004 2307 3217 1353 Size: 651 303 910 3423 Fragments arranged by size: 3423 910 651 303 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3874 4248 4394 387 Size: 1064 138 2285 374 146 1280 Fragments arranged by size: 2285 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2039 2231 2474 3350 3947 4734 5002 Size: 393 407 192 243 876 597 787 268 Cuts at: 5002 1239 Size: 1524 Fragments arranged by size: 1524 876 787 597 407 393 268 243 192 EcoNI CCTnn'n_nnAGG Cuts at: 2058 2058 Size: 5287 EcoO109I rG'GnC_Cy Cuts at: 2125 2366 2125 Size: 241 5046 EcoRI G'AATT_C Cuts at: 2596 2974 2596 Size: 378 4909 FspI TGC'GCA Cuts at: 2516 3793 2516 Size: 1277 4010 HaeII r_GCGC'y Cuts at: 1678 4434 1678 Size: 2756 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3928 3960 4002 4034 1373 Size: 32 135 32 2356 32 42 32 2626 Fragments arranged by size: 2626 2356 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2524 2631 2877 669 Size: 988 281 586 107 246 3079 Fragments arranged by size: 3079 988 586 281 246 107 HindIII A'AGCT_T Cuts at: 748 748 Size: 5287 HpaI GTT'AAC Cuts at: 2877 2877 Size: 5287 KpnI G_GTAC'C Cuts at: 2612 2612 Size: 5287 MfeI C'AATT_G Cuts at: 2886 2886 Size: 5287 MluI A'CGCG_T Cuts at: 5163 5163 Size: 5287 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2157 2202 4401 4585 1305 Size: 852 45 2199 184 2007 Fragments arranged by size: 2199 2007 852 184 45 MscI TGG'CCA Cuts at: 10 64 1489 1832 2249 10 Size: 54 1425 343 417 3048 Fragments arranged by size: 3048 1425 417 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2039 3245 3604 3763 518 Size: 648 873 1206 359 159 2042 Fragments arranged by size: 2042 1206 873 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2200 2293 2386 2412 2703 3380 4528 4773 Size: 594 93 93 26 291 677 1148 245 Cuts at: 4773 1606 Size: 2120 Fragments arranged by size: 2120 1148 677 594 291 245 93 93 26 NcoI C'CATG_G Cuts at: 513 1065 2004 2241 513 Size: 552 939 237 3559 Fragments arranged by size: 3559 939 552 237 NdeI CA'TA_TG Cuts at: 387 387 Size: 5287 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5287 NotI GC'GGCC_GC Cuts at: 2734 2734 Size: 5287 NspI r_CATG'y Cuts at: 1132 1229 2230 2645 4190 1132 Size: 97 1001 415 1545 2229 Fragments arranged by size: 2229 1545 1001 415 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5287 PciI A'CATG_T Cuts at: 4186 4186 Size: 5287 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5287 PfoI T'CCnGG_A Cuts at: 2232 2232 Size: 5287 PmeI GTTT'AAAC Cuts at: 2591 2591 Size: 5287 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3356 3388 4869 4901 3356 Size: 32 1481 32 3742 Fragments arranged by size: 3742 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2125 2125 Size: 5287 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5287 PsiI TTA'TAA Cuts at: 2857 2857 Size: 5287 PstI C_TGCA'G Cuts at: 830 2639 830 Size: 1809 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5287 PvuII CAG'CTG Cuts at: 2200 2200 Size: 5287 RsrII CG'GwC_CG Cuts at: 2136 2136 Size: 5287 SacII CC_GC'GG Cuts at: 2294 2294 Size: 5287 SalI G'TCGA_C Cuts at: 1936 2629 1936 Size: 693 4594 SbfI CC_TGCA'GG Cuts at: 2639 2639 Size: 5287 ScaI AGT'ACT Cuts at: 3535 5247 3535 Size: 1712 3575 SfcI C'TryA_G Cuts at: 826 1045 2635 3770 4451 4642 826 Size: 219 1590 1135 681 191 1471 Fragments arranged by size: 1590 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5287 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5287 SmaI CCC'GGG Cuts at: 1872 2614 1872 Size: 742 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3391 4292 4554 820 Size: 197 926 1448 901 262 1553 Fragments arranged by size: 1553 1448 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3078 493 Size: 2585 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5287 SphI G_CATG'C Cuts at: 1132 2645 1132 Size: 1513 3774 SspI AAT'ATT Cuts at: 5 52 3211 5 Size: 47 3159 2081 Fragments arranged by size: 3159 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5287 StyI C'CwwG_G Cuts at: 513 1065 2004 2241 2726 513 Size: 552 939 237 485 3074 Fragments arranged by size: 3074 939 552 485 237 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2036 2087 2123 2582 3314 3331 3484 Size: 1255 456 51 36 459 732 17 153 Cuts at: 3484 3669 4114 325 Size: 185 445 1498 Fragments arranged by size: 1498 1255 732 459 456 445 185 153 51 36 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3533 5245 96 Size: 274 80 33 51 1443 1556 1712 138 Fragments arranged by size: 1712 1556 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5247 5279 5247 Size: 32 5255 Tth111I GACn'n_nGTC Cuts at: 1316 2546 1316 Size: 1230 4057 XbaI T'CTAG_A Cuts at: 2623 2623 Size: 5287 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2416 2416 Size: 5287 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5287 XmaI C'CCGG_G Cuts at: 1870 2612 1870 Size: 742 4545 XmnI GAAnn'nnTTC Cuts at: 3416 3416 Size: 5287 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3095 276 Size: 53 83 186 936 1561 2468 Fragments arranged by size: 2468 1561 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII RsrII SacII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BfrBI BsiWI BsmBI BstXI BstZ17I Bsu36I EcoICRI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PspXI PsrI SacI SanDI SapI SexAI SfiI SfoI SrfI SwaI