FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4580, 800 aa 1>>>pF1KE4580 800 - 800 aa - 800 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2667+/-0.000394; mu= 9.0283+/- 0.025 mean_var=231.4928+/-47.184, 0's: 0 Z-trim(119.7): 14 B-trim: 710 in 2/55 Lambda= 0.084296 statistics sampled from 34054 (34072) to 34054 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.399), width: 16 Scan time: 15.500 The best scores are: opt bits E(85289) NP_005137 (OMIM: 605941) U4/U6.U5 tri-snRNP-associ ( 800) 5161 641.3 5e-183 XP_011543646 (OMIM: 605941) PREDICTED: U4/U6.U5 tr ( 702) 4463 556.3 1.6e-157 XP_011543647 (OMIM: 605941) PREDICTED: U4/U6.U5 tr ( 642) 4142 517.3 8.6e-146 >>NP_005137 (OMIM: 605941) U4/U6.U5 tri-snRNP-associated (800 aa) initn: 5161 init1: 5161 opt: 5161 Z-score: 3407.0 bits: 641.3 E(85289): 5e-183 Smith-Waterman score: 5161; 100.0% identity (100.0% similar) in 800 aa overlap (1-800:1-800) 10 20 30 40 50 60 pF1KE4 MGSSKKHRGEKEAAGTTAAAGTGGATEQPPRHREHKKHKHRSGGSGGSGGERRKRSRERG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MGSSKKHRGEKEAAGTTAAAGTGGATEQPPRHREHKKHKHRSGGSGGSGGERRKRSRERG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GERGSGRRGAEAEARSSTHGRERSQAEPSERRVKREKRDDGYEAAASSKTSSGDASSLSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GERGSGRRGAEAEARSSTHGRERSQAEPSERRVKREKRDDGYEAAASSKTSSGDASSLSI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EETNKLRAKLGLKPLEVNAIKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 EETNKLRAKLGLKPLEVNAIKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRLL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 NQKLGKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 NQKLGKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 FGQRRQDLYSARDLQGLTVEHAIDSFREGETMILTLKDKGVLQEEEDVLVNVNLVDKERA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 FGQRRQDLYSARDLQGLTVEHAIDSFREGETMILTLKDKGVLQEEEDVLVNVNLVDKERA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 EKNVELRKKKPDYLPYAEDESVDDLAQQKPRSILSKYDEELEGERPHSFRLEQGGTADGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 EKNVELRKKKPDYLPYAEDESVDDLAQQKPRSILSKYDEELEGERPHSFRLEQGGTADGL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 RERELEEIRAKLRLQAQSLSTVGPRLASEYLTPEEMVTFKKTKRRVKKIRKKEKEVVVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RERELEEIRAKLRLQAQSLSTVGPRLASEYLTPEEMVTFKKTKRRVKKIRKKEKEVVVRA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 DDLLPLGDQTQDGDFGSRLRGRGRRRVSEVEEEKEPVPQPLPSDDTRVENMDISDEEEGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DDLLPLGDQTQDGDFGSRLRGRGRRRVSEVEEEKEPVPQPLPSDDTRVENMDISDEEEGG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 APPPGSPQVLEEDEAELELQKQLEKGRRLRQLQQLQQLRDSGEKVVEIVKKLESRQRGWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 APPPGSPQVLEEDEAELELQKQLEKGRRLRQLQQLQQLRDSGEKVVEIVKKLESRQRGWE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 EDEDPERKGAIVFNATSEFCRTLGEIPTYGLAGNREEQEELMDFERDEERSANGGSESDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 EDEDPERKGAIVFNATSEFCRTLGEIPTYGLAGNREEQEELMDFERDEERSANGGSESDG 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE4 EENIGWSTVNLDEEKQQQDFSASSTTILDEEPIVNRGLAAALLLCQNKGLLETTVQKVAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 EENIGWSTVNLDEEKQQQDFSASSTTILDEEPIVNRGLAAALLLCQNKGLLETTVQKVAR 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE4 VKAPNKSLPSAVYCIEDKMAIDDKYSRREEYRGFTQDFKEKDGYKPDVKIEYVDETGRKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VKAPNKSLPSAVYCIEDKMAIDDKYSRREEYRGFTQDFKEKDGYKPDVKIEYVDETGRKL 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE4 TPKEAFRQLSHRFHGKGSGKMKTERRMKKLDEEALLKKMSSSDTPLGTVALLQEKQKAQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 TPKEAFRQLSHRFHGKGSGKMKTERRMKKLDEEALLKKMSSSDTPLGTVALLQEKQKAQK 730 740 750 760 770 780 790 800 pF1KE4 TPYIVLSGSGKSMNANTITK :::::::::::::::::::: NP_005 TPYIVLSGSGKSMNANTITK 790 800 >>XP_011543646 (OMIM: 605941) PREDICTED: U4/U6.U5 tri-sn (702 aa) initn: 4463 init1: 4463 opt: 4463 Z-score: 2948.9 bits: 556.3 E(85289): 1.6e-157 Smith-Waterman score: 4463; 100.0% identity (100.0% similar) in 696 aa overlap (105-800:7-702) 80 90 100 110 120 130 pF1KE4 RSSTHGRERSQAEPSERRVKREKRDDGYEAAASSKTSSGDASSLSIEETNKLRAKLGLKP :::::::::::::::::::::::::::::: XP_011 MLLLVPAASSKTSSGDASSLSIEETNKLRAKLGLKP 10 20 30 140 150 160 170 180 190 pF1KE4 LEVNAIKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRLLNQKLGKIKTLGEDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LEVNAIKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRLLNQKLGKIKTLGEDD 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE4 PWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFGQRRQDLYSARDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFGQRRQDLYSARDL 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE4 QGLTVEHAIDSFREGETMILTLKDKGVLQEEEDVLVNVNLVDKERAEKNVELRKKKPDYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QGLTVEHAIDSFREGETMILTLKDKGVLQEEEDVLVNVNLVDKERAEKNVELRKKKPDYL 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE4 PYAEDESVDDLAQQKPRSILSKYDEELEGERPHSFRLEQGGTADGLRERELEEIRAKLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PYAEDESVDDLAQQKPRSILSKYDEELEGERPHSFRLEQGGTADGLRERELEEIRAKLRL 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE4 QAQSLSTVGPRLASEYLTPEEMVTFKKTKRRVKKIRKKEKEVVVRADDLLPLGDQTQDGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QAQSLSTVGPRLASEYLTPEEMVTFKKTKRRVKKIRKKEKEVVVRADDLLPLGDQTQDGD 280 290 300 310 320 330 440 450 460 470 480 490 pF1KE4 FGSRLRGRGRRRVSEVEEEKEPVPQPLPSDDTRVENMDISDEEEGGAPPPGSPQVLEEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FGSRLRGRGRRRVSEVEEEKEPVPQPLPSDDTRVENMDISDEEEGGAPPPGSPQVLEEDE 340 350 360 370 380 390 500 510 520 530 540 550 pF1KE4 AELELQKQLEKGRRLRQLQQLQQLRDSGEKVVEIVKKLESRQRGWEEDEDPERKGAIVFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AELELQKQLEKGRRLRQLQQLQQLRDSGEKVVEIVKKLESRQRGWEEDEDPERKGAIVFN 400 410 420 430 440 450 560 570 580 590 600 610 pF1KE4 ATSEFCRTLGEIPTYGLAGNREEQEELMDFERDEERSANGGSESDGEENIGWSTVNLDEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ATSEFCRTLGEIPTYGLAGNREEQEELMDFERDEERSANGGSESDGEENIGWSTVNLDEE 460 470 480 490 500 510 620 630 640 650 660 670 pF1KE4 KQQQDFSASSTTILDEEPIVNRGLAAALLLCQNKGLLETTVQKVARVKAPNKSLPSAVYC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KQQQDFSASSTTILDEEPIVNRGLAAALLLCQNKGLLETTVQKVARVKAPNKSLPSAVYC 520 530 540 550 560 570 680 690 700 710 720 730 pF1KE4 IEDKMAIDDKYSRREEYRGFTQDFKEKDGYKPDVKIEYVDETGRKLTPKEAFRQLSHRFH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IEDKMAIDDKYSRREEYRGFTQDFKEKDGYKPDVKIEYVDETGRKLTPKEAFRQLSHRFH 580 590 600 610 620 630 740 750 760 770 780 790 pF1KE4 GKGSGKMKTERRMKKLDEEALLKKMSSSDTPLGTVALLQEKQKAQKTPYIVLSGSGKSMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GKGSGKMKTERRMKKLDEEALLKKMSSSDTPLGTVALLQEKQKAQKTPYIVLSGSGKSMN 640 650 660 670 680 690 800 pF1KE4 ANTITK :::::: XP_011 ANTITK 700 >>XP_011543647 (OMIM: 605941) PREDICTED: U4/U6.U5 tri-sn (642 aa) initn: 4142 init1: 4142 opt: 4142 Z-score: 2738.4 bits: 517.3 E(85289): 8.6e-146 Smith-Waterman score: 4142; 100.0% identity (100.0% similar) in 642 aa overlap (159-800:1-642) 130 140 150 160 170 180 pF1KE4 KLGLKPLEVNAIKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRLLNQKLGKIK :::::::::::::::::::::::::::::: XP_011 MALRQREELREKLAAAKEKRLLNQKLGKIK 10 20 30 190 200 210 220 230 240 pF1KE4 TLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFGQRRQDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFGQRRQDL 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE4 YSARDLQGLTVEHAIDSFREGETMILTLKDKGVLQEEEDVLVNVNLVDKERAEKNVELRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YSARDLQGLTVEHAIDSFREGETMILTLKDKGVLQEEEDVLVNVNLVDKERAEKNVELRK 100 110 120 130 140 150 310 320 330 340 350 360 pF1KE4 KKPDYLPYAEDESVDDLAQQKPRSILSKYDEELEGERPHSFRLEQGGTADGLRERELEEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KKPDYLPYAEDESVDDLAQQKPRSILSKYDEELEGERPHSFRLEQGGTADGLRERELEEI 160 170 180 190 200 210 370 380 390 400 410 420 pF1KE4 RAKLRLQAQSLSTVGPRLASEYLTPEEMVTFKKTKRRVKKIRKKEKEVVVRADDLLPLGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RAKLRLQAQSLSTVGPRLASEYLTPEEMVTFKKTKRRVKKIRKKEKEVVVRADDLLPLGD 220 230 240 250 260 270 430 440 450 460 470 480 pF1KE4 QTQDGDFGSRLRGRGRRRVSEVEEEKEPVPQPLPSDDTRVENMDISDEEEGGAPPPGSPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QTQDGDFGSRLRGRGRRRVSEVEEEKEPVPQPLPSDDTRVENMDISDEEEGGAPPPGSPQ 280 290 300 310 320 330 490 500 510 520 530 540 pF1KE4 VLEEDEAELELQKQLEKGRRLRQLQQLQQLRDSGEKVVEIVKKLESRQRGWEEDEDPERK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VLEEDEAELELQKQLEKGRRLRQLQQLQQLRDSGEKVVEIVKKLESRQRGWEEDEDPERK 340 350 360 370 380 390 550 560 570 580 590 600 pF1KE4 GAIVFNATSEFCRTLGEIPTYGLAGNREEQEELMDFERDEERSANGGSESDGEENIGWST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GAIVFNATSEFCRTLGEIPTYGLAGNREEQEELMDFERDEERSANGGSESDGEENIGWST 400 410 420 430 440 450 610 620 630 640 650 660 pF1KE4 VNLDEEKQQQDFSASSTTILDEEPIVNRGLAAALLLCQNKGLLETTVQKVARVKAPNKSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VNLDEEKQQQDFSASSTTILDEEPIVNRGLAAALLLCQNKGLLETTVQKVARVKAPNKSL 460 470 480 490 500 510 670 680 690 700 710 720 pF1KE4 PSAVYCIEDKMAIDDKYSRREEYRGFTQDFKEKDGYKPDVKIEYVDETGRKLTPKEAFRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PSAVYCIEDKMAIDDKYSRREEYRGFTQDFKEKDGYKPDVKIEYVDETGRKLTPKEAFRQ 520 530 540 550 560 570 730 740 750 760 770 780 pF1KE4 LSHRFHGKGSGKMKTERRMKKLDEEALLKKMSSSDTPLGTVALLQEKQKAQKTPYIVLSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LSHRFHGKGSGKMKTERRMKKLDEEALLKKMSSSDTPLGTVALLQEKQKAQKTPYIVLSG 580 590 600 610 620 630 790 800 pF1KE4 SGKSMNANTITK :::::::::::: XP_011 SGKSMNANTITK 640 800 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:47:22 2016 done: Sat Nov 5 23:47:24 2016 Total Scan time: 15.500 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]