FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1122, 433 aa 1>>>pF1KE1122 433 - 433 aa - 433 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.4204+/-0.000793; mu= 5.0214+/- 0.048 mean_var=191.0458+/-38.785, 0's: 0 Z-trim(115.4): 18 B-trim: 163 in 2/51 Lambda= 0.092791 statistics sampled from 15983 (15999) to 15983 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.491), width: 16 Scan time: 3.790 The best scores are: opt bits E(32554) CCDS1112.1 RUSC1 gene_id:23623|Hs108|chr1 ( 433) 2914 402.0 6.1e-112 CCDS41412.1 RUSC1 gene_id:23623|Hs108|chr1 ( 492) 2914 402.0 6.7e-112 CCDS41410.1 RUSC1 gene_id:23623|Hs108|chr1 ( 902) 2914 402.2 1.1e-111 CCDS41411.1 RUSC1 gene_id:23623|Hs108|chr1 ( 796) 1229 176.6 7.9e-44 CCDS35008.1 RUSC2 gene_id:9853|Hs108|chr9 (1516) 655 99.9 1.8e-20 >>CCDS1112.1 RUSC1 gene_id:23623|Hs108|chr1 (433 aa) initn: 2914 init1: 2914 opt: 2914 Z-score: 2123.2 bits: 402.0 E(32554): 6.1e-112 Smith-Waterman score: 2914; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433) 10 20 30 40 50 60 pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAEAQSGTGQLQEQKKGLLIAVSVSVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TLCPALHALVADGLKPFRKDLITGQRRSSPWSVVEASVKPGSSTRSLGTLYSQVSRLAPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TLCPALHALVADGLKPFRKDLITGQRRSSPWSVVEASVKPGSSTRSLGTLYSQVSRLAPL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SSSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLLYLPTGFFSLARGGCPSLSTELLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SSSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLLYLPTGFFSLARGGCPSLSTELLL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LLQPLSVLTFHLDLLFEHHHHLPLGPPQAPAPPGPPPALQQTMQAMLHFGGRLAQSLRGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LLQPLSVLTFHLDLLFEHHHHLPLGPPQAPAPPGPPPALQQTMQAMLHFGGRLAQSLRGT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SKEAASDPSDSPNLPTPGSWWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEEGAQER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SKEAASDPSDSPNLPTPGSWWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEEGAQER 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PLPTDEMAPGRGLWLGRLFGVPGGPAENENGALKSRRPSSWLPPTVSVLALVKRGAPPEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PLPTDEMAPGRGLWLGRLFGVPGGPAENENGALKSRRPSSWLPPTVSVLALVKRGAPPEM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 PSPQELEASAPRMVQTHRAVRALCDHTAARPDQLSFRRGEVLRVITTVDEDWLRCGRDGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PSPQELEASAPRMVQTHRAVRALCDHTAARPDQLSFRRGEVLRVITTVDEDWLRCGRDGM 370 380 390 400 410 420 430 pF1KE1 EGLVPVGYTSLVL ::::::::::::: CCDS11 EGLVPVGYTSLVL 430 >>CCDS41412.1 RUSC1 gene_id:23623|Hs108|chr1 (492 aa) initn: 2914 init1: 2914 opt: 2914 Z-score: 2122.4 bits: 402.0 E(32554): 6.7e-112 Smith-Waterman score: 2914; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:60-492) 10 20 30 pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKII :::::::::::::::::::::::::::::: CCDS41 SSPALQALAGQAGVRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVSVSVDKII 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE1 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE1 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED 150 160 170 180 190 200 160 170 180 190 200 210 pF1KE1 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP 210 220 230 240 250 260 220 230 240 250 260 270 pF1KE1 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV 270 280 290 300 310 320 280 290 300 310 320 330 pF1KE1 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN 330 340 350 360 370 380 340 350 360 370 380 390 pF1KE1 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR 390 400 410 420 430 440 400 410 420 430 pF1KE1 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL ::::::::::::::::::::::::::::::::::::::::::: CCDS41 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL 450 460 470 480 490 >>CCDS41410.1 RUSC1 gene_id:23623|Hs108|chr1 (902 aa) initn: 2914 init1: 2914 opt: 2914 Z-score: 2118.7 bits: 402.2 E(32554): 1.1e-111 Smith-Waterman score: 2914; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:470-902) 10 20 30 pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKII :::::::::::::::::::::::::::::: CCDS41 PAAKEPGAQAGLEVRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVSVSVDKII 440 450 460 470 480 490 40 50 60 70 80 90 pF1KE1 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP 500 510 520 530 540 550 100 110 120 130 140 150 pF1KE1 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED 560 570 580 590 600 610 160 170 180 190 200 210 pF1KE1 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP 620 630 640 650 660 670 220 230 240 250 260 270 pF1KE1 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV 680 690 700 710 720 730 280 290 300 310 320 330 pF1KE1 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN 740 750 760 770 780 790 340 350 360 370 380 390 pF1KE1 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR 800 810 820 830 840 850 400 410 420 430 pF1KE1 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL ::::::::::::::::::::::::::::::::::::::::::: CCDS41 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL 860 870 880 890 900 >>CCDS41411.1 RUSC1 gene_id:23623|Hs108|chr1 (796 aa) initn: 1277 init1: 1225 opt: 1229 Z-score: 900.4 bits: 176.6 E(32554): 7.9e-44 Smith-Waterman score: 1962; 75.5% identity (75.5% similar) in 433 aa overlap (1-433:470-796) 10 20 30 pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKII :::::::::::::::::::::::::::::: CCDS41 PAAKEPGAQAGLEVRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVSVSVDKII 440 450 460 470 480 490 40 50 60 70 80 90 pF1KE1 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP 500 510 520 530 540 550 100 110 120 130 140 150 pF1KE1 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED 560 570 580 590 600 610 160 170 180 190 200 210 pF1KE1 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP :: CCDS41 AG---------------------------------------------------------- 620 220 230 240 250 260 270 pF1KE1 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV :::::::::::: CCDS41 ------------------------------------------------SWWEQLTQASRV 630 280 290 300 310 320 330 pF1KE1 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN 640 650 660 670 680 690 340 350 360 370 380 390 pF1KE1 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR 700 710 720 730 740 750 400 410 420 430 pF1KE1 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL ::::::::::::::::::::::::::::::::::::::::::: CCDS41 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL 760 770 780 790 >>CCDS35008.1 RUSC2 gene_id:9853|Hs108|chr9 (1516 aa) initn: 943 init1: 655 opt: 655 Z-score: 481.2 bits: 99.9 E(32554): 1.8e-20 Smith-Waterman score: 725; 39.8% identity (58.4% similar) in 399 aa overlap (14-371:992-1379) 10 20 30 40 pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKIISHFGAARNLVQKA :::::. ::...:: :..:::..:. :: CCDS35 QDPFSLTEKPPAEFCLSPDGSSEAISIDLLQKKGLVKAVNIAVDLIVAHFGTSRDPGVKA 970 980 990 1000 1010 1020 50 60 70 80 90 100 pF1KE1 QLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSPWSVVEASVKPGSS .::.: .::.:::::: ::::..:.. :::: : :.: :::.. ::::::::.. : : CCDS35 KLGNSSVSPNVGHLVLKYLCPAVRAVLEDGLKAFVLDVIIGQRKNMPWSVVEASTQLGPS 1030 1040 1050 1060 1070 1080 110 120 130 140 150 160 pF1KE1 TRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLLYLPTGF :. : ::..::.. :.: ::.:::::::: ..::.::. : . ... : : :: CCDS35 TKVLHGLYNKVSQFPELTSHTMRFNAFILGLLNIRSLEFWFNHLYNHEDIIQTHYQPWGF 1090 1100 1110 1120 1130 1140 170 180 190 pF1KE1 FSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEH------------------------- .: :. ::.: :::::::::..: : :::::.: CCDS35 LSAAHTVCPGLFEELLLLLQPLALLPFSLDLLFQHRLLQSGQQQRQHKELLRVSQDLLLS 1150 1160 1170 1180 1190 1200 200 210 220 230 240 250 pF1KE1 -HHHLPLGPPQAPAPPGPPPALQQTMQAM---LHFGGRLAQSLRGTSKEA-ASDPSDSPN : : :. .. :: : .. ::. . . : . : :. : CCDS35 AHSTLQLARARGQEGPGDVDRAAQGERVKGVGASEGGEEEEEEEETEEVAEAAGGSGRAR 1210 1220 1230 1240 1250 1260 260 270 280 290 300 pF1KE1 LPTPGS--WWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEE--GAQERPLPTDEMAP :. :: :: :.:.:: .:. :: ::. : ....:. :: : . : CCDS35 WARGGQAGWWYQLMQSSQVYIDGSIEG---SRFPRGSSNSSSEKKKGAGGGGPP--QAPP 1270 1280 1290 1300 1310 310 320 330 340 350 360 pF1KE1 GRGLWLGRLFGVPGGPAENENGALKSRRP-SSWL--PPTVSVLALVKRGAPPEMP--SPQ : : . :. . :: .: :: .: :. :: :::: ..:. : : :: CCDS35 PR---EGVVEGAEACPASEE--ALGRERGWPFWMGSPPD-SVLAELRRSREREGPAASPA 1320 1330 1340 1350 1360 1370 370 380 390 400 410 420 pF1KE1 ELE--ASAPRMVQTHRAVRALCDHTAARPDQLSFRRGEVLRVITTVDEDWLRCGRDGMEG : : :: : CCDS35 ENEEGASEPSPGGIKWGHLFGSRKAQREARPTNRLPSDWLSLDKSMFQLVAQTVGSRREP 1380 1390 1400 1410 1420 1430 433 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:55:52 2016 done: Mon Nov 7 02:55:52 2016 Total Scan time: 3.790 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]