FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2545, 202 aa 1>>>pF1KE2545 202 - 202 aa - 202 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.4837+/-0.000304; mu= -6.0499+/- 0.019 mean_var=173.7882+/-34.683, 0's: 0 Z-trim(122.4): 21 B-trim: 0 in 0/55 Lambda= 0.097289 statistics sampled from 40365 (40386) to 40365 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.474), width: 16 Scan time: 7.310 The best scores are: opt bits E(85289) NP_001698 (OMIM: 605846) B-cell CLL/lymphoma 7 pro ( 202) 1309 194.7 8.3e-50 NP_001287990 (OMIM: 605846) B-cell CLL/lymphoma 7 ( 213) 1114 167.4 1.5e-41 NP_001184173 (OMIM: 605846) B-cell CLL/lymphoma 7 ( 145) 581 92.5 3.5e-19 NP_004756 (OMIM: 605847) B-cell CLL/lymphoma 7 pro ( 217) 556 89.1 5.8e-18 NP_001273455 (OMIM: 605847) B-cell CLL/lymphoma 7 ( 242) 556 89.1 6.4e-18 XP_011544282 (OMIM: 605847) PREDICTED: B-cell CLL/ ( 293) 551 88.4 1.2e-17 NP_001019979 (OMIM: 601406) B-cell CLL/lymphoma 7 ( 210) 497 80.8 1.8e-15 NP_066273 (OMIM: 601406) B-cell CLL/lymphoma 7 pro ( 231) 495 80.5 2.3e-15 XP_016879377 (OMIM: 605847) PREDICTED: B-cell CLL/ ( 178) 469 76.8 2.3e-14 XP_016879375 (OMIM: 605847) PREDICTED: B-cell CLL/ ( 178) 469 76.8 2.3e-14 XP_016879376 (OMIM: 605847) PREDICTED: B-cell CLL/ ( 178) 469 76.8 2.3e-14 XP_016879374 (OMIM: 605847) PREDICTED: B-cell CLL/ ( 178) 469 76.8 2.3e-14 >>NP_001698 (OMIM: 605846) B-cell CLL/lymphoma 7 protein (202 aa) initn: 1309 init1: 1309 opt: 1309 Z-score: 1015.2 bits: 194.7 E(85289): 8.3e-50 Smith-Waterman score: 1309; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202) 10 20 30 40 50 60 pF1KE2 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 KSNSSAAREPNGFPSDASANSSLLLEFQDENSNQSSVSDVYQLKVDSSTNSSPSPQQSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KSNSSAAREPNGFPSDASANSSLLLEFQDENSNQSSVSDVYQLKVDSSTNSSPSPQQSES 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 LSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQVVEEEEDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQVVEEEEDS 130 140 150 160 170 180 190 200 pF1KE2 GAPPLKRFCVDQPTVPQTASES :::::::::::::::::::::: NP_001 GAPPLKRFCVDQPTVPQTASES 190 200 >>NP_001287990 (OMIM: 605846) B-cell CLL/lymphoma 7 prot (213 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 866.9 bits: 167.4 E(85289): 1.5e-41 Smith-Waterman score: 1114; 100.0% identity (100.0% similar) in 171 aa overlap (32-202:43-213) 10 20 30 40 50 60 pF1KE2 SGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKSK :::::::::::::::::::::::::::::: NP_001 HWRNLGSLQPLPLRFKQFSCLSLLSSWDYREKKWVTVGDTSLRIFKWVPVTDSKEKEKSK 20 30 40 50 60 70 70 80 90 100 110 120 pF1KE2 SNSSAAREPNGFPSDASANSSLLLEFQDENSNQSSVSDVYQLKVDSSTNSSPSPQQSESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SNSSAAREPNGFPSDASANSSLLLEFQDENSNQSSVSDVYQLKVDSSTNSSPSPQQSESL 80 90 100 110 120 130 130 140 150 160 170 180 pF1KE2 SPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQVVEEEEDSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQVVEEEEDSG 140 150 160 170 180 190 190 200 pF1KE2 APPLKRFCVDQPTVPQTASES ::::::::::::::::::::: NP_001 APPLKRFCVDQPTVPQTASES 200 210 >>NP_001184173 (OMIM: 605846) B-cell CLL/lymphoma 7 prot (145 aa) initn: 600 init1: 578 opt: 581 Z-score: 465.3 bits: 92.5 E(85289): 3.5e-19 Smith-Waterman score: 818; 71.8% identity (71.8% similar) in 202 aa overlap (1-202:1-145) 10 20 30 40 50 60 pF1KE2 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 KSNSSAAREPNGFPSDASANSSLLLEFQDENSNQSSVSDVYQLKVDSSTNSSPSPQQSES :::::::::::::::::::::::::::: NP_001 KSNSSAAREPNGFPSDASANSSLLLEFQ-------------------------------- 70 80 130 140 150 160 170 180 pF1KE2 LSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQVVEEEEDS ::::::::::::::::::::::::::::::::::: NP_001 -------------------------EPSLPSSEVADEPPTLTKEEPVPLETQVVEEEEDS 90 100 110 120 190 200 pF1KE2 GAPPLKRFCVDQPTVPQTASES :::::::::::::::::::::: NP_001 GAPPLKRFCVDQPTVPQTASES 130 140 >>NP_004756 (OMIM: 605847) B-cell CLL/lymphoma 7 protein (217 aa) initn: 608 init1: 356 opt: 556 Z-score: 443.5 bits: 89.1 E(85289): 5.8e-18 Smith-Waterman score: 582; 49.1% identity (71.4% similar) in 220 aa overlap (1-193:1-215) 10 20 30 40 50 60 pF1KE2 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS :.::.::::::::::::::::::.:::::.:::.:::::::::::::::::.: .:.:. NP_004 MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERR 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 KSNSSA----AREPNGFPSDASANSSL-LLEFQDENSNQSSVSDVYQLKVDSSTNSSP-- .....: .:: : .. ... : ::...::::::: :. .....:. :: NP_004 RAGGGAERSRGRERRGRGASPRGGGPLILLDLNDENSNQSFHSE---GSLQKGTEPSPGG 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 SPQQSESLSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVP--LET .:: :. .::: . ...::: :::: ..:. .. .:::: :::::::: ::. NP_004 TPQPSRPVSPAGPPEGVPEEAQPPRLGQE--RDPGGITAGSTDEPPMLTKEEPVPELLEA 120 130 140 150 160 170 180 190 200 pF1KE2 QVVE-----------------EEEDS-GAPPLKRFCVDQPTVPQTASES .. : . ::: :::::::.: . : NP_004 EAPEAYPVFEPVPPVPEAAQGDTEDSEGAPPLKRICPNAPDP 180 190 200 210 >>NP_001273455 (OMIM: 605847) B-cell CLL/lymphoma 7 prot (242 aa) initn: 568 init1: 356 opt: 556 Z-score: 442.7 bits: 89.1 E(85289): 6.4e-18 Smith-Waterman score: 556; 51.0% identity (74.7% similar) in 194 aa overlap (1-187:1-185) 10 20 30 40 50 60 pF1KE2 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS :.::.::::::::::::::::::.:::::.:::.:::::::::::::::::.: .:.:. NP_001 MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERR 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 KSNSSA----AREPNGFPSDASANSSL-LLEFQDENSNQSSVSDVYQLKVDSSTNSSP-- .....: .:: : .. ... : ::...::::::: : . .....:. :: NP_001 RAGGGAERSRGRERRGRGASPRGGGPLILLDLNDENSNQSFHS---EGSLQKGTEPSPGG 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 SPQQSESLSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQV .:: :. .::: . ...::: :::: ..:. .. .:::: :::::::: NP_001 TPQPSRPVSPAGPPEGVPEEAQPPRLGQE--RDPGGITAGSTDEPPMLTKEEPVPE---- 120 130 140 150 160 170 180 190 200 pF1KE2 VEEEEDSGAPPLKRFCVDQPTVPQTASES . : ::::. .: NP_001 LLEAEDSGVRMTRRALHEKGLKTEPLRRLLPRRGLRTNVRPSSMAVPDTRAPGGGSKAPR 180 190 200 210 220 230 >>XP_011544282 (OMIM: 605847) PREDICTED: B-cell CLL/lymp (293 aa) initn: 579 init1: 356 opt: 551 Z-score: 437.5 bits: 88.4 E(85289): 1.2e-17 Smith-Waterman score: 551; 51.6% identity (76.6% similar) in 188 aa overlap (1-179:1-183) 10 20 30 40 50 60 pF1KE2 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS :.::.::::::::::::::::::.:::::.:::.:::::::::::::::::.: .:.:. XP_011 MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERR 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 KSNSSA----AREPNGFPSDASANSSL-LLEFQDENSNQSSVSDVYQLKVDSSTNSSP-- .....: .:: : .. ... : ::...::::::: :. .....:. :: XP_011 RAGGGAERSRGRERRGRGASPRGGGPLILLDLNDENSNQSFHSEG---SLQKGTEPSPGG 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 SPQQSESLSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVP--LET .:: :. .::: . ...::: :::: ..:. .. .:::: :::::::: ::. XP_011 TPQPSRPVSPAGPPEGVPEEAQPPRLGQE--RDPGGITAGSTDEPPMLTKEEPVPELLEA 120 130 140 150 160 170 180 190 200 pF1KE2 QVVEEEEDSGAPPLKRFCVDQPTVPQTASES ...: : XP_011 ETMEMMLDKKQIQAIFLFELKMGHKAVETLRNINNTLGPGTANEHIVQWWFKKFCKEDKS 180 190 200 210 220 230 >>NP_001019979 (OMIM: 601406) B-cell CLL/lymphoma 7 prot (210 aa) initn: 483 init1: 375 opt: 497 Z-score: 399.0 bits: 80.8 E(85289): 1.8e-15 Smith-Waterman score: 508; 45.3% identity (69.7% similar) in 201 aa overlap (1-187:1-197) 10 20 30 40 50 60 pF1KE2 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS :::::::::::::::::::.:::::::::::::::::::::::::.::::::. : .:. NP_001 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVPVTEPKVDDKN 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 KSNSSAAREPNGFPSDASANSSL--LLEFQDENSNQSSVSDVYQLKVDSSTNSSPSPQQS :..... : : . ::: .....:.::::::..:. .: ..:.::::.:. . NP_001 KNKKKGKDEKCGSEVTTPENSSSPGMMDMHDDNSNQSSIADASPIKQENSSNSSPAPEPN 70 80 90 100 110 120 120 130 140 150 160 pF1KE2 ESLSPAHTSDFRTDDSQPPTLGQEILE------------EPSLPSSEVADEPPTLTKEEP : :. .. ..:..: . : : :. ::: .:. :. . NP_001 -SAVPSDGTEAKVDEAQADGKEHPGAEDASDEQNSQSSMEHSMNSSEKVDRQPS--GDSG 130 140 150 160 170 170 180 190 200 pF1KE2 VPLETQVVEEEEDSGAPPLKRFCVDQPTVPQTASES . ::... .. . :.:: :. NP_001 LAAETSAISQDLE-GVPPSKKMKLEASQQNSEEM 180 190 200 210 >>NP_066273 (OMIM: 601406) B-cell CLL/lymphoma 7 protein (231 aa) initn: 490 init1: 375 opt: 495 Z-score: 396.8 bits: 80.5 E(85289): 2.3e-15 Smith-Waterman score: 495; 43.8% identity (70.4% similar) in 203 aa overlap (1-201:1-194) 10 20 30 40 50 60 pF1KE2 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS :::::::::::::::::::.:::::::::::::::::::::::::.::::::. : .:. NP_066 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVPVTEPKVDDKN 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 KSNSSAAREPNGFPSDASANSSL--LLEFQDENSNQSSVSDVYQLKVDSSTNSSPSPQQS :..... : : . ::: .....:.::::::..:. .: ..:.::::.:. . NP_066 KNKKKGKDEKCGSEVTTPENSSSPGMMDMHDDNSNQSSIADASPIKQENSSNSSPAPEPN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE2 ESLSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQVVEEEE .. :. .. ..:..: :.: .:. . ...:: . .. : .. :... NP_066 SAV-PSDGTEAKVDEAQAD--GKE---HPG--AEDASDEQNSQSSMEHSMNSSEKVDRQP 130 140 150 160 170 180 190 200 pF1KE2 DSGAPPLKRFCVDQPTVPQTASES :: : ::.. :. NP_066 -SGDSGLAAETSAISQVPRSRSQRGSQIGREPIGLSGDLEGVPPSKKMKLEASQQNSEEM 180 190 200 210 220 230 >>XP_016879377 (OMIM: 605847) PREDICTED: B-cell CLL/lymp (178 aa) initn: 478 init1: 356 opt: 469 Z-score: 378.9 bits: 76.8 E(85289): 2.3e-14 Smith-Waterman score: 469; 53.7% identity (78.5% similar) in 149 aa overlap (1-142:1-146) 10 20 30 40 50 60 pF1KE2 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS :.::.::::::::::::::::::.:::::.:::.:::::::::::::::::.: .:.:. XP_016 MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERR 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 KSNSSA----AREPNGFPSDASANSSL-LLEFQDENSNQSSVSDVYQLKVDSSTNSSP-- .....: .:: : .. ... : ::...::::::: : . .....:. :: XP_016 RAGGGAERSRGRERRGRGASPRGGGPLILLDLNDENSNQSFHS---EGSLQKGTEPSPGG 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 SPQQSESLSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQV .:: :. .::: . ...::: :::: XP_016 TPQPSRPVSPAGPPEGVPEEAQPPRLGQERGRTRSRGHNCWQHRRTPNADQGGACSRTAG 120 130 140 150 160 170 >>XP_016879375 (OMIM: 605847) PREDICTED: B-cell CLL/lymp (178 aa) initn: 478 init1: 356 opt: 469 Z-score: 378.9 bits: 76.8 E(85289): 2.3e-14 Smith-Waterman score: 469; 53.7% identity (78.5% similar) in 149 aa overlap (1-142:1-146) 10 20 30 40 50 60 pF1KE2 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVPVTDSKEKEKS :.::.::::::::::::::::::.:::::.:::.:::::::::::::::::.: .:.:. XP_016 MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERR 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 KSNSSA----AREPNGFPSDASANSSL-LLEFQDENSNQSSVSDVYQLKVDSSTNSSP-- .....: .:: : .. ... : ::...::::::: : . .....:. :: XP_016 RAGGGAERSRGRERRGRGASPRGGGPLILLDLNDENSNQSFHS---EGSLQKGTEPSPGG 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 SPQQSESLSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQV .:: :. .::: . ...::: :::: XP_016 TPQPSRPVSPAGPPEGVPEEAQPPRLGQERGRTRSRGHNCWQHRRTPNADQGGACSRTAG 120 130 140 150 160 170 202 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:47:18 2016 done: Tue Nov 8 03:47:19 2016 Total Scan time: 7.310 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]