FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1385, 125 aa 1>>>pF1KE1385 125 - 125 aa - 125 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4222+/-0.000311; mu= 14.9060+/- 0.019 mean_var=48.9722+/- 9.983, 0's: 0 Z-trim(114.4): 23 B-trim: 1583 in 1/52 Lambda= 0.183273 statistics sampled from 24241 (24264) to 24241 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.284), width: 16 Scan time: 3.770 The best scores are: opt bits E(85289) NP_003632 (OMIM: 604456) interferon-induced transm ( 125) 827 225.7 1.6e-59 NP_066362 (OMIM: 605579,614680) interferon-induced ( 133) 569 157.5 5.7e-39 NP_006426 (OMIM: 605578) interferon-induced transm ( 132) 547 151.6 3.2e-37 NP_001020466 (OMIM: 610967,614757) interferon-indu ( 132) 270 78.4 3.5e-15 XP_016878377 (OMIM: 128200,614386) PREDICTED: prol ( 340) 142 44.8 0.00012 NP_660282 (OMIM: 128200,614386) proline-rich trans ( 340) 142 44.8 0.00012 XP_016878378 (OMIM: 128200,614386) PREDICTED: prol ( 340) 142 44.8 0.00012 XP_016878376 (OMIM: 128200,614386) PREDICTED: prol ( 346) 142 44.8 0.00012 XP_011544017 (OMIM: 128200,614386) PREDICTED: prol ( 394) 142 44.9 0.00013 XP_011544018 (OMIM: 128200,614386) PREDICTED: prol ( 394) 142 44.9 0.00013 NP_001243371 (OMIM: 128200,614386) proline-rich tr ( 394) 142 44.9 0.00013 >>NP_003632 (OMIM: 604456) interferon-induced transmembr (125 aa) initn: 827 init1: 827 opt: 827 Z-score: 1189.8 bits: 225.7 E(85289): 1.6e-59 Smith-Waterman score: 827; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125) 10 20 30 40 50 60 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ 70 80 90 100 110 120 pF1KE1 EKRGY ::::: NP_003 EKRGY >>NP_066362 (OMIM: 605579,614680) interferon-induced tra (133 aa) initn: 590 init1: 564 opt: 569 Z-score: 820.7 bits: 157.5 E(85289): 5.7e-39 Smith-Waterman score: 569; 83.3% identity (90.7% similar) in 108 aa overlap (1-106:22-129) 10 20 30 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVW : :::::::::::: . : ::::.:.::::::::::: NP_066 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 SLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIG :::::::.: ::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL 70 80 90 100 110 120 100 110 120 pF1KE1 FILL--LVFGSVTVYHIMLQIIQEKRGY .:.. :.: NP_066 LIVIPVLIFQAYG 130 >>NP_006426 (OMIM: 605578) interferon-induced transmembr (132 aa) initn: 564 init1: 543 opt: 547 Z-score: 789.3 bits: 151.6 E(85289): 3.2e-37 Smith-Waterman score: 547; 80.2% identity (91.5% similar) in 106 aa overlap (1-106:21-126) 10 20 30 40 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS : :::.:::.::.: . : ::::.:.:::::::::::: NP_006 MNHIVQTFSPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWS 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF ::::::.: :::::::::::::::::::::::::::::::::::::::::::::.::: . NP_006 LFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTILL 70 80 90 100 110 120 110 120 pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY :.. :. NP_006 IIIPVLVVQAQR 130 >>NP_001020466 (OMIM: 610967,614757) interferon-induced (132 aa) initn: 276 init1: 255 opt: 270 Z-score: 393.5 bits: 78.4 E(85289): 3.5e-15 Smith-Waterman score: 270; 42.1% identity (73.7% similar) in 95 aa overlap (13-102:12-105) 10 20 30 40 50 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVP-DHVVWSLFNTLFLNWCCLGFIAFAY :: . :.... . : ::..::.:.::.:: :::::.:.:: NP_001 MDTAYPREDTRAPTPSKAGAHTALTLGAPHPPPRDHLIWSVFSTLYLNLCCLGFLALAY 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 SVKSRDRKMVGDVTGAQAYASTAKCLNI----WALILGILMTIGFILLLVFGSVTVYHIM :.:.::.:.:::. .:. ..: ::: :: :.:. .:. .:... NP_001 SIKARDQKVVGDLEAARRFGSKAKCYNILAAMWTLVPPLLL-LGLVVTGALHLARLAKDS 60 70 80 90 100 110 120 pF1KE1 LQIIQEKRGY NP_001 AAFFSTKFDDADYD 120 130 >>XP_016878377 (OMIM: 128200,614386) PREDICTED: proline- (340 aa) initn: 143 init1: 123 opt: 142 Z-score: 204.6 bits: 44.8 E(85289): 0.00012 Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329) 10 20 30 40 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS :. ::. : : . .. . :... . XP_016 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA 220 230 240 250 260 270 50 60 70 80 90 100 pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF ... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. : XP_016 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS 280 290 300 310 320 330 110 120 pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY XP_016 CVINLGVYK 340 >>NP_660282 (OMIM: 128200,614386) proline-rich transmemb (340 aa) initn: 143 init1: 123 opt: 142 Z-score: 204.6 bits: 44.8 E(85289): 0.00012 Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329) 10 20 30 40 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS :. ::. : : . .. . :... . NP_660 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA 220 230 240 250 260 270 50 60 70 80 90 100 pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF ... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. : NP_660 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS 280 290 300 310 320 330 110 120 pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY NP_660 CVINLGVYK 340 >>XP_016878378 (OMIM: 128200,614386) PREDICTED: proline- (340 aa) initn: 143 init1: 123 opt: 142 Z-score: 204.6 bits: 44.8 E(85289): 0.00012 Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329) 10 20 30 40 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS :. ::. : : . .. . :... . XP_016 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA 220 230 240 250 260 270 50 60 70 80 90 100 pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF ... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. : XP_016 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS 280 290 300 310 320 330 110 120 pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY XP_016 CVINLGDAA 340 >>XP_016878376 (OMIM: 128200,614386) PREDICTED: proline- (346 aa) initn: 143 init1: 123 opt: 142 Z-score: 204.5 bits: 44.8 E(85289): 0.00012 Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329) 10 20 30 40 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS :. ::. : : . .. . :... . XP_016 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA 220 230 240 250 260 270 50 60 70 80 90 100 pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF ... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. : XP_016 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS 280 290 300 310 320 330 110 120 pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY XP_016 CVINLGGCCMSLKHQ 340 >>XP_011544017 (OMIM: 128200,614386) PREDICTED: proline- (394 aa) initn: 143 init1: 123 opt: 142 Z-score: 203.6 bits: 44.9 E(85289): 0.00013 Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329) 10 20 30 40 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS :. ::. : : . .. . :... . XP_011 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA 220 230 240 250 260 270 50 60 70 80 90 100 pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF ... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. : XP_011 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS 280 290 300 310 320 330 110 120 pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY XP_011 CVINLGGEWGLGTGRGGMEGLARAALLTPAPALSCLSSLPLLCLSLSPPPPVCPSLSSPT 340 350 360 370 380 390 >>XP_011544018 (OMIM: 128200,614386) PREDICTED: proline- (394 aa) initn: 143 init1: 123 opt: 142 Z-score: 203.6 bits: 44.9 E(85289): 0.00013 Smith-Waterman score: 142; 33.0% identity (63.6% similar) in 88 aa overlap (11-98:243-329) 10 20 30 40 pF1KE1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWS :. ::. : : . .. . :... . XP_011 GAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILA 220 230 240 250 260 270 50 60 70 80 90 100 pF1KE1 LFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGF ... . : ....::::.: ::. . ::: ::: . .:: :.: ::. :.:. : XP_011 ILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIAS 280 290 300 310 320 330 110 120 pF1KE1 ILLLVFGSVTVYHIMLQIIQEKRGY XP_011 CVINLGGEWGLGTGRGGMEGLARAALLTPAPALSCLSSLPLLCLSLSPPPPVCPSLSSPT 340 350 360 370 380 390 125 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:59:26 2016 done: Mon Nov 7 02:59:27 2016 Total Scan time: 3.770 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]