FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6238, 303 aa 1>>>pF1KE6238 303 - 303 aa - 303 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3637+/-0.00081; mu= 14.7258+/- 0.049 mean_var=63.0986+/-13.114, 0's: 0 Z-trim(107.5): 47 B-trim: 480 in 1/48 Lambda= 0.161460 statistics sampled from 9577 (9622) to 9577 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.296), width: 16 Scan time: 2.210 The best scores are: opt bits E(32554) CCDS7943.1 MTCH2 gene_id:23788|Hs108|chr11 ( 303) 2043 484.4 4.5e-137 CCDS4828.1 MTCH1 gene_id:23787|Hs108|chr6 ( 372) 1025 247.3 1.3e-65 CCDS64411.1 MTCH1 gene_id:23787|Hs108|chr6 ( 389) 714 174.9 8.7e-44 >>CCDS7943.1 MTCH2 gene_id:23788|Hs108|chr11 (303 aa) initn: 2043 init1: 2043 opt: 2043 Z-score: 2574.3 bits: 484.4 E(32554): 4.5e-137 Smith-Waterman score: 2043; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303) 10 20 30 40 50 60 pF1KE6 MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVCQLPGLFSYAQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVCQLPGLFSYAQH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IASIDGRRGLFTGLTPRLCSGVLGTVVHGKVLQHYQESDKGEELGPGNVQKEVSSSFDHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 IASIDGRRGLFTGLTPRLCSGVLGTVVHGKVLQHYQESDKGEELGPGNVQKEVSSSFDHV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 IKETTREMIARSAATLITHPFHVITLRSMVQFIGRESKYCGLCDSIITIYREEGILGFFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 IKETTREMIARSAATLITHPFHVITLRSMVQFIGRESKYCGLCDSIITIYREEGILGFFA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GLVPRLLGDILSLWLCNSLAYLVNTYALDSGVSTMNEMKSYSQAVTGFFASMLTYPFVLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 GLVPRLLGDILSLWLCNSLAYLVNTYALDSGVSTMNEMKSYSQAVTGFFASMLTYPFVLV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 SNLMAVNNCGLAGGCPPYSPIYTSWIDCWCMLQKEGNMSRGNSLFFRKVPFGKTYCCDLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 SNLMAVNNCGLAGGCPPYSPIYTSWIDCWCMLQKEGNMSRGNSLFFRKVPFGKTYCCDLK 250 260 270 280 290 300 pF1KE6 MLI ::: CCDS79 MLI >>CCDS4828.1 MTCH1 gene_id:23787|Hs108|chr6 (372 aa) initn: 1010 init1: 678 opt: 1025 Z-score: 1291.4 bits: 247.3 E(32554): 1.3e-65 Smith-Waterman score: 1025; 49.7% identity (82.3% similar) in 288 aa overlap (8-295:86-369) 10 20 30 pF1KE6 MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPP : ::.:.: ::.::.:::.:::::.::.:: CCDS48 PAAQPSARRMDGGSGGLGSGDNAPTTEALFVALGAGVTALSHPLLYVKLLIQVGHEPMPP 60 70 80 90 100 110 40 50 60 70 80 90 pF1KE6 TIGRNIFGRQVCQLPGLFSYAQHIASIDGRRGLFTGLTPRLCSGVLGTVVHGKVLQHYQE :.: :..::.: ::..:.::..:...::. ::: ::.::: :..:.::..:.. . . CCDS48 TLGTNVLGRKVLYLPSFFTYAKYIVQVDGKIGLFRGLSPRLMSNALSTVTRGSMKKVFPP 120 130 140 150 160 170 100 110 120 130 140 150 pF1KE6 SDKGEELGPGNVQKEVSSSFDHVIKETTREMIARSAATLITHPFHVITLRSMVQFIGRES :. :... . ....:. .:.:::. ::. . .. ...::.:::..: ::::.:::. CCDS48 -DEIEQVSN---KDDMKTSLKKVVKETSYEMMMQCVSRMLAHPLHVISMRCMVQFVGREA 180 190 200 210 220 230 160 170 180 190 200 210 pF1KE6 KYCGLCDSIITIYREEGILGFFAGLVPRLLGDILSLWLCNSLAYLVNTYALDSGVSTMNE :: :. .:: :..:::.::::.::.:.::::.. :: :: ::...:.: .:.. : CCDS48 KYSGVLSSIGKIFKEEGLLGFFVGLIPHLLGDVVFLWGCNLLAHFINAYLVDDSFSQALA 240 250 260 270 280 290 220 230 240 250 260 270 pF1KE6 MKSYSQAVTGFFASMLTYPFVLVSNLMAVNNCGLAGGCPPYSPIYTSWIDCWCMLQKEGN ..::.. : :. .:::::::.::..::::::::: .: :::::.. ::: :: .:. .:. CCDS48 IRSYTKFVMGIAVSMLTYPFLLVGDLMAVNNCGLQAGLPPYSPVFKSWIHCWKYLSVQGQ 300 310 320 330 340 350 280 290 300 pF1KE6 MSRGNSLFFRKVPFGKTYCCDLKMLI . ::.::.::.: :. . CCDS48 LFRGSSLLFRRVSSGSCFALE 360 370 >>CCDS64411.1 MTCH1 gene_id:23787|Hs108|chr6 (389 aa) initn: 1024 init1: 387 opt: 714 Z-score: 899.5 bits: 174.9 E(32554): 8.7e-44 Smith-Waterman score: 991; 47.5% identity (78.7% similar) in 305 aa overlap (8-295:86-386) 10 20 30 pF1KE6 MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPP : ::.:.: ::.::.:::.:::::.::.:: CCDS64 PAAQPSARRMDGGSGGLGSGDNAPTTEALFVALGAGVTALSHPLLYVKLLIQVGHEPMPP 60 70 80 90 100 110 40 50 60 70 80 90 pF1KE6 TIGRNIFGRQVCQLPGLFSYAQHIASIDGRRGLFTGLTPRLCSGVLGTVVHGKVLQHYQE :.: :..::.: ::..:.::..:...::. ::: ::.::: :..:.::..:.. . . CCDS64 TLGTNVLGRKVLYLPSFFTYAKYIVQVDGKIGLFRGLSPRLMSNALSTVTRGSMKKVFPP 120 130 140 150 160 170 100 110 120 130 140 150 pF1KE6 SDKGEELGPGNVQKEVSSSFDHVIKETTREMIARSAATLITHPFHVITLRSMVQFIGRES :. :... . ....:. .:.:::. ::. . .. ...::.:::..: ::::.:::. CCDS64 -DEIEQVSN---KDDMKTSLKKVVKETSYEMMMQCVSRMLAHPLHVISMRCMVQFVGREA 180 190 200 210 220 230 160 170 180 190 200 210 pF1KE6 KYCGLCDSIITIYREEGILGFFAGLVPRLLGDILSLWLCNSLAYLVNTYALDSGVSTM-- :: :. .:: :..:::.::::.::.:.::::.. :: :: ::...:.: .:..:: CCDS64 KYSGVLSSIGKIFKEEGLLGFFVGLIPHLLGDVVFLWGCNLLAHFINAYLVDDSVSDTPG 240 250 260 270 280 290 220 230 240 250 260 pF1KE6 ---NE------------MKSYSQAVTGFFASMLTYPFVLVSNLMAVNNCGLAGGCPPYSP :. ..::.. : :. .:::::::.::..::::::::: .: ::::: CCDS64 GLGNDQNPGSQFSQALAIRSYTKFVMGIAVSMLTYPFLLVGDLMAVNNCGLQAGLPPYSP 300 310 320 330 340 350 270 280 290 300 pF1KE6 IYTSWIDCWCMLQKEGNMSRGNSLFFRKVPFGKTYCCDLKMLI .. ::: :: .:. .:.. ::.::.::.: :. . CCDS64 VFKSWIHCWKYLSVQGQLFRGSSLLFRRVSSGSCFALE 360 370 380 303 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:21:22 2016 done: Tue Nov 8 11:21:22 2016 Total Scan time: 2.210 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]