(Circular) (Six-base) MAPSORT of: pFN21AE0203.seq Check: 672 from: 1 to: 5608 pFN21AE0203 5608 bp With 182 enzymes: SgfI * October 20, 2009 10:45 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3418 278 Size: 53 83 186 936 1882 2468 Fragments arranged by size: 2468 1882 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2951 1937 Size: 1014 4594 Acc65I G'GTAC_C Cuts at: 2929 2929 Size: 5608 AclI AA'CG_TT Cuts at: 1563 3735 4108 1563 Size: 2172 373 3063 Fragments arranged by size: 3063 2172 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2316 2919 3671 5055 5323 1632 Size: 684 603 752 1384 268 1917 Fragments arranged by size: 1917 1384 752 684 603 268 AflII C'TTAA_G Cuts at: 820 1017 2245 820 Size: 197 1228 4183 Fragments arranged by size: 4183 1228 197 AflIII A'CryG_T Cuts at: 1203 4507 5484 1203 Size: 3304 977 1327 Fragments arranged by size: 3304 1327 977 AgeI A'CCGG_T Cuts at: 4439 4439 Size: 5608 AhdI GACnn_n'nnGTC Cuts at: 4337 4337 Size: 5608 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5608 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2892 1184 Size: 1708 3900 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2142 2174 2142 Size: 32 5576 AlwNI CAG_nnn'CTG Cuts at: 3351 4923 3351 Size: 1572 4036 ApaLI G'TGCA_C Cuts at: 3665 4821 3665 Size: 1156 4452 ApoI r'AATT_y Cuts at: 1493 2270 2430 2917 3143 3295 5404 1493 Size: 777 160 487 226 152 2109 1697 Fragments arranged by size: 2109 1697 777 487 226 160 152 AseI AT'TA_AT Cuts at: 160 1032 2219 4162 160 Size: 872 1187 1943 1606 Fragments arranged by size: 1943 1606 1187 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5608 AvaI C'yCGr_G Cuts at: 1870 1943 2933 1870 Size: 73 990 4545 Fragments arranged by size: 4545 990 73 AvrII C'CTAG_G Cuts at: 2677 2677 Size: 5608 BamHI G'GATC_C Cuts at: 2938 3305 2938 Size: 367 5241 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2929 4384 618 Size: 325 217 627 1142 1455 1842 Fragments arranged by size: 1842 1455 1142 627 325 217 BanII G_rGCy'C Cuts at: 1391 2927 1391 Size: 1536 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2304 2781 928 Size: 971 405 477 3755 Fragments arranged by size: 3755 971 477 405 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3799 3833 1903 Size: 34 50 34 1778 34 3678 Fragments arranged by size: 3678 1778 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3500 4710 3500 Size: 1210 4398 BclI T'GATC_A Cuts at: 1548 1548 Size: 5608 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4219 136 Size: 107 122 71 631 605 2547 1525 Fragments arranged by size: 2547 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5603 5603 Size: 5608 BlpI GC'TnA_GC Cuts at: 3025 3025 Size: 5608 Bme1580I G_kGCm'C Cuts at: 1790 2338 2713 3669 4825 1790 Size: 548 375 956 1156 2573 Fragments arranged by size: 2573 1156 956 548 375 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5608 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2341 3339 4297 Size: 416 53 83 399 24 924 998 958 Cuts at: 4297 442 Size: 1753 Fragments arranged by size: 1753 998 958 924 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5608 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2073 2082 4268 1239 Size: 834 9 2186 2579 Fragments arranged by size: 2579 2186 834 9 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3733 4598 4896 3733 Size: 865 298 4445 Fragments arranged by size: 4445 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4271 882 Size: 617 2772 2219 Fragments arranged by size: 2772 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3399 493 Size: 711 2195 2702 Fragments arranged by size: 2702 2195 711 BsaBI GATnn'nnATC Cuts at: 2312 2742 5602 2312 Size: 430 2860 2318 Fragments arranged by size: 2860 2318 430 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3415 3797 4432 275 Size: 53 83 186 936 1882 382 635 1451 Fragments arranged by size: 1882 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4041 4439 4713 4860 5271 4041 Size: 398 274 147 411 4378 Fragments arranged by size: 4378 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2059 2089 2142 2172 2427 Size: 30 165 30 656 30 53 30 255 Cuts at: 2427 2457 1178 Size: 30 4329 Fragments arranged by size: 4329 656 255 165 53 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2768 1186 Size: 1582 4026 BseYI C'CCAG_C Cuts at: 4811 5307 4811 Size: 496 5112 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5035 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3058 3819 4847 1540 Size: 275 186 1057 761 1028 2301 Fragments arranged by size: 2301 1057 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2155 2331 3669 3754 4825 2155 Size: 176 1338 85 1071 2938 Fragments arranged by size: 2938 1338 1071 176 85 BsmI GAATG_Cn' Cuts at: 3119 3212 3119 Size: 93 5515 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2155 2331 2338 2713 2927 3669 3754 Size: 399 365 176 7 375 214 742 85 Cuts at: 3754 4825 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 399 375 365 214 176 85 7 BspEI T'CCGG_A Cuts at: 5271 5271 Size: 5608 BspHI T'CATG_A Cuts at: 2287 3497 5227 2287 Size: 1210 1730 2668 Fragments arranged by size: 2668 1730 1210 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2963 844 Size: 2119 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3495 1394 Size: 429 1672 3507 Fragments arranged by size: 3507 1672 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4103 4277 65 Size: 1183 2855 174 1396 Fragments arranged by size: 2855 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4252 4439 1700 Size: 110 2442 187 2869 Fragments arranged by size: 2869 2442 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5608 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5608 BssSI C'ACGA_G Cuts at: 3668 4680 3668 Size: 1012 4596 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5608 BstBI TT'CG_AA Cuts at: 4412 4412 Size: 5608 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5608 BstYI r'GATC_y Cuts at: 1972 2527 2938 3305 3690 3707 5159 5245 5257 Size: 555 411 367 385 17 1452 86 12 Cuts at: 5257 5603 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 555 411 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 5056 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4869 Fragments arranged by size: 4869 683 56 BtsI GCAGTG_nn' Cuts at: 2834 3124 3918 3938 2834 Size: 290 794 20 4504 Fragments arranged by size: 4504 794 290 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5608 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5573 DraI TTT'AAA Cuts at: 2424 2820 2854 2912 2424 Size: 396 34 58 5120 Fragments arranged by size: 5120 396 58 34 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4615 809 Size: 507 3299 1802 Fragments arranged by size: 3299 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3055 3944 5573 Size: 54 1425 50 275 18 1225 889 1629 Cuts at: 5573 8 Size: 43 Fragments arranged by size: 1629 1425 1225 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3055 1537 Size: 275 1243 4090 Fragments arranged by size: 4090 1243 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2130 2589 2718 2820 3538 1353 Size: 777 459 129 102 718 3423 Fragments arranged by size: 3423 777 718 459 129 102 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4195 4569 4715 387 Size: 1064 138 2606 374 146 1280 Fragments arranged by size: 2606 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2073 2082 2316 2919 3671 4268 5055 Size: 393 441 9 234 603 752 597 787 Cuts at: 5055 5323 1239 Size: 268 1524 Fragments arranged by size: 1524 787 752 603 597 441 393 268 234 9 EcoRI G'AATT_C Cuts at: 2430 2917 3295 2430 Size: 487 378 4743 Fragments arranged by size: 4743 487 378 FspI TGC'GCA Cuts at: 4114 4114 Size: 5608 HaeII r_GCGC'y Cuts at: 1678 4755 1678 Size: 3077 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2123 2155 2427 2459 2653 Size: 32 135 32 551 32 272 32 194 Cuts at: 2653 2685 2867 2899 4249 4281 4323 4355 1373 Size: 32 182 32 1350 32 42 32 2626 Fragments arranged by size: 2626 1350 551 272 194 182 135 42 32 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2952 3198 669 Size: 988 281 1014 246 3079 Fragments arranged by size: 3079 1014 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5608 HpaI GTT'AAC Cuts at: 3198 3198 Size: 5608 KpnI G_GTAC'C Cuts at: 2933 2933 Size: 5608 MfeI C'AATT_G Cuts at: 3207 3207 Size: 5608 MluI A'CGCG_T Cuts at: 5484 5484 Size: 5608 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4722 4906 1305 Size: 3417 184 2007 Fragments arranged by size: 3417 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3786 Fragments arranged by size: 3786 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3566 3925 4084 518 Size: 648 2400 359 159 2042 Fragments arranged by size: 2400 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 3024 3701 4849 5094 1606 Size: 1418 677 1148 245 2120 Fragments arranged by size: 2120 1418 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5056 NdeI CA'TA_TG Cuts at: 387 387 Size: 5608 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5608 NotI GC'GGCC_GC Cuts at: 3055 3055 Size: 5608 NspI r_CATG'y Cuts at: 1132 1229 2057 2255 2966 4511 1132 Size: 97 828 198 711 1545 2229 Fragments arranged by size: 2229 1545 828 711 198 97 PasI CC'CwG_GG Cuts at: 1348 2706 1348 Size: 1358 4250 PciI A'CATG_T Cuts at: 4507 4507 Size: 5608 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5608 PmeI GTTT'AAAC Cuts at: 2912 2912 Size: 5608 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2142 2174 3677 3709 5190 5222 2142 Size: 32 1503 32 1481 32 2528 Fragments arranged by size: 2528 1503 1481 32 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5608 PsiI TTA'TAA Cuts at: 3178 3178 Size: 5608 PstI C_TGCA'G Cuts at: 830 2361 2960 830 Size: 1531 599 3478 Fragments arranged by size: 3478 1531 599 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5608 SalI G'TCGA_C Cuts at: 1936 2950 1936 Size: 1014 4594 SapI GCTCTTCn'nnn_ Cuts at: 2589 2589 Size: 5608 SbfI CC_TGCA'GG Cuts at: 2960 2960 Size: 5608 ScaI AGT'ACT Cuts at: 3856 5568 3856 Size: 1712 3896 SfcI C'TryA_G Cuts at: 826 1045 2357 2956 4091 4772 4963 826 Size: 219 1312 599 1135 681 191 1471 Fragments arranged by size: 1471 1312 1135 681 599 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5608 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5608 SmaI CCC'GGG Cuts at: 1872 2935 1872 Size: 1063 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2245 3712 4613 4875 820 Size: 197 926 302 1467 901 262 1553 Fragments arranged by size: 1553 1467 926 901 302 262 197 SnaBI TAC'GTA Cuts at: 493 3399 493 Size: 2906 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5608 SphI G_CATG'C Cuts at: 1132 2966 1132 Size: 1834 3774 SspI AAT'ATT Cuts at: 5 52 2893 3532 5 Size: 47 2841 639 2081 Fragments arranged by size: 2841 2081 639 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5608 StyI C'CwwG_G Cuts at: 513 1065 2634 2677 3047 513 Size: 552 1569 43 370 3074 Fragments arranged by size: 3074 1569 552 370 43 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2719 3635 3652 3805 3990 4435 325 Size: 1255 1139 916 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1139 916 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3854 5566 96 Size: 274 80 33 51 1443 1877 1712 138 Fragments arranged by size: 1877 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5568 5600 5568 Size: 32 5576 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5608 XbaI T'CTAG_A Cuts at: 2944 2944 Size: 5608 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5608 XmaI C'CCGG_G Cuts at: 1870 2933 1870 Size: 1063 4545 XmnI GAAnn'nnTTC Cuts at: 2070 2778 3737 2070 Size: 708 959 3941 Fragments arranged by size: 3941 959 708 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3416 276 Size: 53 83 186 936 1882 2468 Fragments arranged by size: 2468 1882 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI ApaI AscI BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI XcmI