Result of FASTA (omim) for
pFN21AE0203
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0203, 301 aa
1>>>pF1KE0203 301 - 301 aa - 301 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2731+/-0.000299; mu= 9.0849+/- 0.019
mean_var=138.9956+/-27.862, 0's: 0 Z-trim(121.4): 8 B-trim: 0 in 0/54
Lambda= 0.108786
statistics sampled from 38065 (38073) to 38065 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.446), width: 16
Scan time: 5.950
The best scores are: opt bits E(85289)
NP_060328 (OMIM: 610716) TIMELESS-interacting prot ( 301) 1996 323.8 2.6e-88
XP_006720657 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
XP_016877879 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
XP_005254578 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
XP_011520045 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
XP_005254579 (OMIM: 610716) PREDICTED: TIMELESS-in ( 301) 1983 321.7 1.1e-87
NP_001276915 (OMIM: 610716) TIMELESS-interacting p ( 200) 1291 213.0 3.9e-55
XP_016877880 (OMIM: 610716) PREDICTED: TIMELESS-in ( 200) 1291 213.0 3.9e-55
>>NP_060328 (OMIM: 610716) TIMELESS-interacting protein (301 aa)
initn: 1996 init1: 1996 opt: 1996 Z-score: 1706.4 bits: 323.8 E(85289): 2.6e-88
Smith-Waterman score: 1996; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
250 260 270 280 290 300
pF1KE0 R
:
NP_060 R
>>XP_006720657 (OMIM: 610716) PREDICTED: TIMELESS-intera (301 aa)
initn: 1983 init1: 1983 opt: 1983 Z-score: 1695.4 bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_006 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
250 260 270 280 290 300
pF1KE0 R
:
XP_006 R
>>XP_016877879 (OMIM: 610716) PREDICTED: TIMELESS-intera (301 aa)
initn: 1983 init1: 1983 opt: 1983 Z-score: 1695.4 bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_016 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
250 260 270 280 290 300
pF1KE0 R
:
XP_016 R
>>XP_005254578 (OMIM: 610716) PREDICTED: TIMELESS-intera (301 aa)
initn: 1983 init1: 1983 opt: 1983 Z-score: 1695.4 bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_005 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
250 260 270 280 290 300
pF1KE0 R
:
XP_005 R
>>XP_011520045 (OMIM: 610716) PREDICTED: TIMELESS-intera (301 aa)
initn: 1983 init1: 1983 opt: 1983 Z-score: 1695.4 bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_011 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
250 260 270 280 290 300
pF1KE0 R
:
XP_011 R
>>XP_005254579 (OMIM: 610716) PREDICTED: TIMELESS-intera (301 aa)
initn: 1983 init1: 1983 opt: 1983 Z-score: 1695.4 bits: 321.7 E(85289): 1.1e-87
Smith-Waterman score: 1983; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KE0 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVPVPPKRTV
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
XP_005 MLEPQENGVIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGNGAPVRVPPKRTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDFIDRVEYLGSKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA
250 260 270 280 290 300
pF1KE0 R
:
XP_005 R
>>NP_001276915 (OMIM: 610716) TIMELESS-interacting prote (200 aa)
initn: 1291 init1: 1291 opt: 1291 Z-score: 1110.9 bits: 213.0 E(85289): 3.9e-55
Smith-Waterman score: 1291; 100.0% identity (100.0% similar) in 200 aa overlap (102-301:1-200)
80 90 100 110 120 130
pF1KE0 LISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLG
::::::::::::::::::::::::::::::
NP_001 MLIRHMEHWAHRLFPKLQFEDFIDRVEYLG
10 20 30
140 150 160 170 180 190
pF1KE0 SKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASEL
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 SRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEE
100 110 120 130 140 150
260 270 280 290 300
pF1KE0 SNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEAR
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEAR
160 170 180 190 200
>>XP_016877880 (OMIM: 610716) PREDICTED: TIMELESS-intera (200 aa)
initn: 1291 init1: 1291 opt: 1291 Z-score: 1110.9 bits: 213.0 E(85289): 3.9e-55
Smith-Waterman score: 1291; 100.0% identity (100.0% similar) in 200 aa overlap (102-301:1-200)
80 90 100 110 120 130
pF1KE0 LISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLG
::::::::::::::::::::::::::::::
XP_016 MLIRHMEHWAHRLFPKLQFEDFIDRVEYLG
10 20 30
140 150 160 170 180 190
pF1KE0 SKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SKKEVQTCLKRIRLDLPILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASEL
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 SRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEE
100 110 120 130 140 150
260 270 280 290 300
pF1KE0 SNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEAR
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEAR
160 170 180 190 200
301 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:26:08 2016 done: Thu Nov 3 21:26:09 2016
Total Scan time: 5.950 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]