FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1486, 903 aa 1>>>pF1KE1486 903 - 903 aa - 903 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.9946+/-0.000908; mu= 4.3849+/- 0.055 mean_var=166.2813+/-33.134, 0's: 0 Z-trim(111.8): 23 B-trim: 0 in 0/52 Lambda= 0.099461 statistics sampled from 12670 (12683) to 12670 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.39), width: 16 Scan time: 4.420 The best scores are: opt bits E(32554) CCDS11594.1 AKAP1 gene_id:8165|Hs108|chr17 ( 903) 5969 868.9 0 >>CCDS11594.1 AKAP1 gene_id:8165|Hs108|chr17 (903 aa) initn: 5969 init1: 5969 opt: 5969 Z-score: 4635.4 bits: 868.9 E(32554): 0 Smith-Waterman score: 5969; 99.9% identity (99.9% similar) in 903 aa overlap (1-903:1-903) 10 20 30 40 50 60 pF1KE1 MAIQFRSLFPLALPGMLALLGWWWFFSRKKGHVSSHDEQQVEAGAVQLRADPAIKEPLPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAIQFRSLFPLALPGMLALLGWWWFFSRKKGHVSSHDEQQVEAGAVQLRADPAIKEPLPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EDVCPKVVSTPPSVTEPPEKELSTVSKLPAEPPALLQTHPPCRRSESSGILPNTTDMRLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 EDVCPKVVSTPPSVTEPPEKELSTVSKLPAEPPALLQTHPPCRRSESSGILPNTTDMRLR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PGTRRDDSTKLELALTGGEAKSIPLECPLSSPKGVLFSSKSAEVCKQDSPFSRVPRKVQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PGTRRDDSTKLELALTGGEAKSIPLECPLSSPKGVLFSSKSAEVCKQDSPFSRVPRKVQP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GYPVVPAEKRSSGERARETGGAEGTGDAVLGEKVLEEALLSREHVLELENSKGPSLASLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GYPVVPAEKRSSGERARETGGAEGTGDAVLGEKVLEEALLSREHVLELENSKGPSLASLE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GEEDKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GEEDKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 EGELGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEGLDRNEEIKRAAFQIISQVISEAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 EGELGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEGLDRNEEIKRAAFQIISQVISEAT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 EQVLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 EQVLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGLP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 LPGLPAEGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LPGLPAEGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGI 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 LVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETSSSPRDKAITPPLPEST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETSSSPRDKAITPPLPEST 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 VPFSNGVLKGELSDLGAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLKKTESFQNAQAGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VPFSNGVLKGELSDLGAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLKKTESFQNAQAGS 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE1 NPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQSVQICHIEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQSVQICHIEGS 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE1 QHHVDKALNLIGKKFKELNLTNIYAPPLPSLALPSLPMTSWLMLPDGITVEVIVVNQVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QHHVDKALNLIGKKFKELNLTNIYAPPLPSLALPSLPMTSWLMLPDGITVEVIVVNQVNA 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE1 GHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVV 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE1 ASYEETNEVEIRYVHYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSP :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSP 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE1 EADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGDEVVLINRSLVERGLAQWVDSYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 EADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGDEVVLINRSLVERGLAQWVDSYY 850 860 870 880 890 900 pF1KE1 TSL ::: CCDS11 TSL 903 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:43:34 2016 done: Mon Nov 7 15:43:35 2016 Total Scan time: 4.420 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]