FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6204, 274 aa 1>>>pF1KE6204 274 - 274 aa - 274 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5783+/-0.000351; mu= 14.1018+/- 0.022 mean_var=77.5713+/-15.537, 0's: 0 Z-trim(115.2): 21 B-trim: 966 in 1/50 Lambda= 0.145621 statistics sampled from 25576 (25582) to 25576 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.3), width: 16 Scan time: 5.990 The best scores are: opt bits E(85289) NP_005994 (OMIM: 191327) cytochrome b-c1 complex s ( 274) 1796 386.5 2.8e-107 >>NP_005994 (OMIM: 191327) cytochrome b-c1 complex subun (274 aa) initn: 1796 init1: 1796 opt: 1796 Z-score: 2047.0 bits: 386.5 E(85289): 2.8e-107 Smith-Waterman score: 1796; 99.6% identity (100.0% similar) in 274 aa overlap (1-274:1-274) 10 20 30 40 50 60 pF1KE6 MLSVAARSGPFAPVLSATSRGVAGALRPLVQATVPATPEQPVLDLKRPFLSRESLSGQAV :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MLSVASRSGPFAPVLSATSRGVAGALRPLVQATVPATPEQPVLDLKRPFLSRESLSGQAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RRPLVASVGLNVPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RRPLVASVGLNVPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 TTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 QKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHG 190 200 210 220 230 240 250 260 270 pF1KE6 SHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG :::::::::::::::::::::::::::::::::: NP_005 SHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 250 260 270 274 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:03:36 2016 done: Tue Nov 8 11:03:37 2016 Total Scan time: 5.990 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]