FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3613, 148 aa
  1>>>pF1KE3613 148 - 148 aa - 148 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7018+/-0.000607; mu= 14.2585+/- 0.036
 mean_var=52.6616+/-10.617, 0's: 0 Z-trim(110.3): 15  B-trim: 0 in 0/50
 Lambda= 0.176737
 statistics sampled from 11527 (11534) to 11527 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.354), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2          ( 148) 1044 273.3 3.8e-74
CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2         ( 126)  885 232.7 5.3e-62
CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7          ( 148)  297 82.9 8.2e-17
CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17        ( 175)  248 70.4 5.4e-13


>>CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2               (148 aa)
 initn: 1044 init1: 1044 opt: 1044  Z-score: 1444.7  bits: 273.3 E(32554): 3.8e-74
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
               70        80        90       100       110       120

              130       140        
pF1KE3 PFIVVPITVTLLVTALVVWQSKRTEGIV
       ::::::::::::::::::::::::::::
CCDS25 PFIVVPITVTLLVTALVVWQSKRTEGIV
              130       140        

>>CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2              (126 aa)
 initn: 885 init1: 885 opt: 885  Z-score: 1226.6  bits: 232.7 E(32554): 5.3e-62
Smith-Waterman score: 885; 100.0% identity (100.0% similar) in 126 aa overlap (23-148:1-126)

               10        20        30        40        50        60
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
                             ::::::::::::::::::::::::::::::::::::::
CCDS77                       MTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
                                     10        20        30        

               70        80        90       100       110       120
pF1KE3 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
       40        50        60        70        80        90        

              130       140        
pF1KE3 PFIVVPITVTLLVTALVVWQSKRTEGIV
       ::::::::::::::::::::::::::::
CCDS77 PFIVVPITVTLLVTALVVWQSKRTEGIV
      100       110       120      

>>CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7               (148 aa)
 initn: 300 init1: 286 opt: 297  Z-score: 415.3  bits: 82.9 E(32554): 8.2e-17
Smith-Waterman score: 297; 34.3% identity (63.5% similar) in 137 aa overlap (13-148:14-148)

                10        20        30         40        50        
pF1KE3  MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLR-ELCLTQFQVDMEAVGETLWCD
                    : :::      . .:.:.  : : :  ::   :   :  :    ::.
CCDS55 METGALRRPQLLPLLLLLCGGCPRAGGCNET--GMLERLPLCGKAFADMMGKVDVWKWCN
               10        20        30          40        50        

       60        70        80        90       100       110        
pF1KE3 WGRTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSI
        .. :  :. ...::   :. .::.:::  .. :. ..: ..: .: ..   ..:::  .
CCDS55 LSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEV
       60        70        80        90       100       110        

      120       130       140        
pF1KE3 LYPFIVVPITVTLLVTALVVWQSKRTEGIV
       : :.::.:...:. ...::::.::::. ..
CCDS55 LIPLIVIPVVLTVAMAGLVVWRSKRTDTLL
      120       130       140        

>>CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17             (175 aa)
 initn: 245 init1: 230 opt: 248  Z-score: 346.7  bits: 70.4 E(32554): 5.4e-13
Smith-Waterman score: 248; 32.4% identity (63.9% similar) in 108 aa overlap (38-145:66-172)

        10        20        30        40        50        60       
pF1KE3 LPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWGRTIRSYR
                                     ..: .... .:. . :  ::::.   : : 
CCDS11 NPHEALAQPLPTTGTPGSEGGTVKNYETAVQFCWNHYKDQMDPI-EKDWCDWAMISRPYS
          40        50        60        70         80        90    

        70        80        90       100       110       120       
pF1KE3 ELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILYPFIVVPI
        : ::  :.:: .   .::  ..:... .:  .: .: .   .  ::: ..:  .:..::
CCDS11 TLRDCLEHFAELFDLGFPNPLAERIIFETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPI
          100       110       120       130       140       150    

       130       140        
pF1KE3 TVTLLVTALVVWQSKRTEGIV
        .  .. .::::.:: .:   
CCDS11 CLIPFLITLVVWRSKDSEAQA
          160       170     




148 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:03:10 2016 done: Mon Nov  7 03:03:10 2016
 Total Scan time:  1.770 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]