FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3924, 346 aa 1>>>pF1KE3924 346 - 346 aa - 346 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8676+/-0.000337; mu= 20.9446+/- 0.021 mean_var=155.6799+/-33.932, 0's: 0 Z-trim(118.4): 203 B-trim: 5 in 1/52 Lambda= 0.102792 statistics sampled from 31077 (31405) to 31077 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.368), width: 16 Scan time: 7.890 The best scores are: opt bits E(85289) NP_722540 (OMIM: 602859,614870,614871) peroxisome ( 346) 2361 361.9 1.1e-99 XP_011539875 (OMIM: 602859,614870,614871) PREDICTE ( 345) 2342 359.1 7.9e-99 NP_002608 (OMIM: 602859,614870,614871) peroxisome ( 326) 1346 211.4 2.2e-54 XP_011539878 (OMIM: 602859,614870,614871) PREDICTE ( 200) 1329 208.5 1e-53 >>NP_722540 (OMIM: 602859,614870,614871) peroxisome biog (346 aa) initn: 2361 init1: 2361 opt: 2361 Z-score: 1910.5 bits: 361.9 E(85289): 1.1e-99 Smith-Waterman score: 2361; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346) 10 20 30 40 50 60 pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_722 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_722 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_722 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_722 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_722 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER 250 260 270 280 290 300 310 320 330 340 pF1KE3 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR :::::::::::::::::::::::::::::::::::::::::::::: NP_722 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 310 320 330 340 >>XP_011539875 (OMIM: 602859,614870,614871) PREDICTED: p (345 aa) initn: 2340 init1: 1337 opt: 2342 Z-score: 1895.2 bits: 359.1 E(85289): 7.9e-99 Smith-Waterman score: 2342; 99.7% identity (99.7% similar) in 346 aa overlap (1-346:1-345) 10 20 30 40 50 60 pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: XP_011 WFYIHGVFYHLAKRLTGITY-ALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL 190 200 210 220 230 250 260 270 280 290 300 pF1KE3 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER 240 250 260 270 280 290 310 320 330 340 pF1KE3 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR :::::::::::::::::::::::::::::::::::::::::::::: XP_011 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 300 310 320 330 340 >>NP_002608 (OMIM: 602859,614870,614871) peroxisome biog (326 aa) initn: 1341 init1: 1341 opt: 1346 Z-score: 1097.2 bits: 211.4 E(85289): 2.2e-54 Smith-Waterman score: 2183; 94.2% identity (94.2% similar) in 346 aa overlap (1-346:1-326) 10 20 30 40 50 60 pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL :::::::::::::::::::: :::::::::::::::::::: NP_002 WFYIHGVFYHLAKRLTGITY--------------------LRVRSLPGEDLRARVSYRLL 190 200 210 220 250 260 270 280 290 300 pF1KE3 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER 230 240 250 260 270 280 310 320 330 340 pF1KE3 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR :::::::::::::::::::::::::::::::::::::::::::::: NP_002 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 290 300 310 320 >>XP_011539878 (OMIM: 602859,614870,614871) PREDICTED: p (200 aa) initn: 1329 init1: 1329 opt: 1329 Z-score: 1085.5 bits: 208.5 E(85289): 1e-53 Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199) 10 20 30 40 50 60 pF1KE3 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL ::::::::::::::::::: XP_011 WFYIHGVFYHLAKRLTGITR 190 200 346 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:54:00 2016 done: Sun Nov 6 08:54:01 2016 Total Scan time: 7.890 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]