FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1309, 357 aa 1>>>pF1KE1309 357 - 357 aa - 357 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 13.2003+/-0.00051; mu= -17.4291+/- 0.032 mean_var=506.3164+/-105.159, 0's: 0 Z-trim(121.9): 7 B-trim: 41 in 1/58 Lambda= 0.056998 statistics sampled from 39141 (39150) to 39141 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.459), width: 16 Scan time: 9.410 The best scores are: opt bits E(85289) NP_003745 (OMIM: 603914) eukaryotic translation in ( 357) 2319 204.7 2.7e-52 NP_002802 (OMIM: 157970) 26S proteasome non-ATPase ( 324) 404 47.2 6.3e-05 NP_006824 (OMIM: 614729) COP9 signalosome complex ( 327) 354 43.0 0.0011 >>NP_003745 (OMIM: 603914) eukaryotic translation initia (357 aa) initn: 2319 init1: 2319 opt: 2319 Z-score: 1059.9 bits: 204.7 E(85289): 2.7e-52 Smith-Waterman score: 2319; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357) 10 20 30 40 50 60 pF1KE1 MATPAVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MATPAVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QTPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVILASIVDSYERRNEGAARVIGTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 QTPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVILASIVDSYERRNEGAARVIGTL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDIT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 EHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 EHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 YYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 YYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL 310 320 330 340 350 >>NP_002802 (OMIM: 157970) 26S proteasome non-ATPase reg (324 aa) initn: 371 init1: 187 opt: 404 Z-score: 209.4 bits: 47.2 E(85289): 6.3e-05 Smith-Waterman score: 404; 29.0% identity (64.7% similar) in 272 aa overlap (92-356:9-277) 70 80 90 100 110 pF1KE1 TPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVILASIVDSYERRNE--GAARVIGT : .::..: :.:: ..: .. . ::.:. NP_002 MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGV 10 20 30 120 130 140 150 160 170 pF1KE1 LLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATG :::. .:. ..:.: :.:: .:.. . .: : .. .::: . :::. : :.::: :: NP_002 LLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTG 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE1 HDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTL-MGVPGRTMGVMFTPL . .... :.: ..: :: . . .:.. .. . .::.:. . : . : . NP_002 PKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHV 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE1 TVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDL-QQVGGASARIQDALSTVLQYAEDVL : . . ..:..::. ... .. . : ::. . .:: : .. ... : . .: : : NP_002 TSEIGAEEAEEVGVEHLLRD-IKDTTVGTLSQRITNQVHGLKG-LNSKLLDIRSYLEKVA 160 170 180 190 200 210 300 310 320 330 340 350 pF1KE1 SGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL .::. .. . :... : .: . ..: . . :: ..:.:::.: .: .::.. : NP_002 TGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHN-L 220 230 240 250 260 270 pF1KE1 VNL .: NP_002 INNKIANRDAEKKEGQEKEESKKDRKEDKEKDKDKEKSDVKKEEKKEKK 280 290 300 310 320 >>NP_006824 (OMIM: 614729) COP9 signalosome complex subu (327 aa) initn: 296 init1: 131 opt: 354 Z-score: 187.2 bits: 43.0 E(85289): 0.0011 Smith-Waterman score: 354; 25.7% identity (59.8% similar) in 311 aa overlap (50-356:2-307) 20 30 40 50 60 70 pF1KE1 AAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPG ::::::.:: . : .:. .. : ..:. NP_006 MAAAAAAAAATNGTGGSSGM--EVDAAVVPS 10 20 80 90 100 110 120 130 pF1KE1 PALPGPFPGGRVVRLHPVILASIVDSY--ERRNEG-AARVIGTLLGTVDKHSVEVTNCFS : :. : :::... .: : . : .:: ..:::.:.: . ...:: : : NP_006 VMACG-VTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFE 30 40 50 60 70 80 140 150 160 170 180 190 pF1KE1 VPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPN . . :... .: :. . : :.: . .::::.:: .. .:. . . NP_006 LLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIES 90 100 110 120 130 140 200 210 220 230 240 250 pF1KE1 PIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK-T :. : .. .. . .... :.. . :.. ..:. :: : ..:::::: . . : NP_006 PLFLKLNPMTKHTDLPVSVFESVIDIINGEAT-MLFAELTYTLATEEAERIGVDHVARMT 150 160 170 180 190 200 260 270 280 290 300 310 pF1KE1 CFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQV . .. .. : .: ... .. .:.:.. .:.: .. . : ..: . . NP_006 ATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCL 210 220 230 240 250 260 320 330 340 350 pF1KE1 PKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL : . : :.: . .. ::. ...::...:.. ..:. .:: NP_006 PVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQ-FVNKFNVLYDRQGIGRRMRGLF 270 280 290 300 310 320 NP_006 F 357 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:05:03 2016 done: Mon Nov 7 03:05:05 2016 Total Scan time: 9.410 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]