FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2547, 464 aa 1>>>pF1KE2547 464 - 464 aa - 464 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.4484+/-0.000947; mu= 1.6942+/- 0.058 mean_var=299.2428+/-61.654, 0's: 0 Z-trim(114.9): 24 B-trim: 156 in 1/53 Lambda= 0.074142 statistics sampled from 15468 (15483) to 15468 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.476), width: 16 Scan time: 3.740 The best scores are: opt bits E(32554) CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9 ( 464) 3189 354.3 1.5e-97 CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9 ( 463) 3150 350.2 2.7e-96 >>CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9 (464 aa) initn: 3189 init1: 3189 opt: 3189 Z-score: 1864.8 bits: 354.3 E(32554): 1.5e-97 Smith-Waterman score: 3189; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464) 10 20 30 40 50 60 pF1KE2 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 370 380 390 400 410 420 430 440 450 460 pF1KE2 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF :::::::::::::::::::::::::::::::::::::::::::: CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF 430 440 450 460 >>CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9 (463 aa) initn: 3228 init1: 3150 opt: 3150 Z-score: 1842.2 bits: 350.2 E(32554): 2.7e-96 Smith-Waterman score: 3150; 99.8% identity (100.0% similar) in 459 aa overlap (1-459:1-459) 10 20 30 40 50 60 pF1KE2 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 370 380 390 400 410 420 430 440 450 460 pF1KE2 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF ::::::::::::::::::::::::::::::::::::::. CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF 430 440 450 460 464 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:53:29 2016 done: Tue Nov 8 03:53:29 2016 Total Scan time: 3.740 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]