FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1332, 223 aa 1>>>pF1KE1332 223 - 223 aa - 223 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3465+/-0.000803; mu= 13.1828+/- 0.048 mean_var=62.5090+/-12.240, 0's: 0 Z-trim(107.1): 14 B-trim: 0 in 0/49 Lambda= 0.162219 statistics sampled from 9385 (9393) to 9385 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.289), width: 16 Scan time: 2.150 The best scores are: opt bits E(32554) CCDS3462.1 UCHL1 gene_id:7345|Hs108|chr4 ( 223) 1485 355.9 1.2e-98 CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13 ( 230) 856 208.7 2.5e-54 CCDS73586.1 UCHL3 gene_id:7347|Hs108|chr13 ( 194) 742 182.0 2.3e-46 >>CCDS3462.1 UCHL1 gene_id:7345|Hs108|chr4 (223 aa) initn: 1485 init1: 1485 opt: 1485 Z-score: 1884.7 bits: 355.9 E(32554): 1.2e-98 Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP 130 140 150 160 170 180 190 200 210 220 pF1KE1 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA ::::::::::::::::::::::::::::::::::::::::::: CCDS34 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 190 200 210 220 >>CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13 (230 aa) initn: 836 init1: 342 opt: 856 Z-score: 1088.9 bits: 208.7 E(32554): 2.5e-54 Smith-Waterman score: 856; 55.2% identity (83.4% similar) in 223 aa overlap (5-222:8-230) 10 20 30 40 50 pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA :.: :::. :. :..::. .:.:::: :.. : :. :: :.::.:::::.: CCDS94 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK ..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.:: CCDS94 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHL .:: :. .::::.::. .:. .::...:.. :.::: . .:.::..::: . .::::: CCDS94 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL 130 140 150 160 170 180 180 190 200 210 220 pF1KE1 YELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA :::::: :::.::: .:..:::.:: .::..: ::. :.::.:.:: : CCDS94 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 190 200 210 220 230 >>CCDS73586.1 UCHL3 gene_id:7347|Hs108|chr13 (194 aa) initn: 730 init1: 342 opt: 742 Z-score: 945.9 bits: 182.0 E(32554): 2.3e-46 Smith-Waterman score: 742; 55.7% identity (84.0% similar) in 194 aa overlap (34-222:1-194) 10 20 30 40 50 60 pF1KE1 KPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFR .. : :. :: :.::.:::::.: ..: :: CCDS73 MDPELLSMVPRPVCAVLLLFPITEKYEVFR 10 20 30 70 80 90 100 110 120 pF1KE1 KKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSET .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::.:: :. CCDS73 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES 40 50 60 70 80 90 130 140 150 160 170 pF1KE1 EKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHLYELDGR .::::.::. .:. .::...:.. :.::: . .:.::..::: . .::::::::::: CCDS73 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR 100 110 120 130 140 150 180 190 200 210 220 pF1KE1 MPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA :::.::: .:..:::.:: .::..: ::. :.::.:.:: : CCDS73 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 160 170 180 190 223 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:07:25 2016 done: Mon Nov 7 03:07:26 2016 Total Scan time: 2.150 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]