FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1342, 187 aa 1>>>pF1KE1342 187 - 187 aa - 187 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2255+/-0.000645; mu= 13.0419+/- 0.039 mean_var=57.5999+/-11.509, 0's: 0 Z-trim(109.1): 10 B-trim: 0 in 0/51 Lambda= 0.168991 statistics sampled from 10643 (10648) to 10643 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.327), width: 16 Scan time: 2.030 The best scores are: opt bits E(32554) CCDS47240.1 DHFR gene_id:1719|Hs108|chr5 ( 187) 1256 313.9 3.6e-86 CCDS2926.1 DHFR2 gene_id:200895|Hs108|chr3 ( 187) 1130 283.2 6.4e-77 CCDS78028.1 DHFR gene_id:1719|Hs108|chr5 ( 135) 904 228.0 1.9e-60 CCDS78029.1 DHFR gene_id:1719|Hs108|chr5 ( 129) 825 208.8 1.1e-54 >>CCDS47240.1 DHFR gene_id:1719|Hs108|chr5 (187 aa) initn: 1256 init1: 1256 opt: 1256 Z-score: 1660.4 bits: 313.9 E(32554): 3.6e-86 Smith-Waterman score: 1256; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187) 10 20 30 40 50 60 pF1KE1 MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF 130 140 150 160 170 180 pF1KE1 EVYEKND ::::::: CCDS47 EVYEKND >>CCDS2926.1 DHFR2 gene_id:200895|Hs108|chr3 (187 aa) initn: 1130 init1: 1130 opt: 1130 Z-score: 1494.4 bits: 283.2 E(32554): 6.4e-77 Smith-Waterman score: 1130; 93.4% identity (96.2% similar) in 183 aa overlap (5-187:5-187) 10 20 30 40 50 60 pF1KE1 MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS :::::::::::::::::::: :::::::::::::::::::::::::::::.::::: CCDS29 MFLLLNCIVAVSQNMGIGKNGDLPRPPLRNEFRYFQRMTTTSSVEGKQNLVIMGRKTWFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS ::::::::: ::::::::::::::::::::.:::::::::::.:::::::::.::::::: CCDS29 IPEKNRPLKDRINLVLSRELKEPPQGAHFLARSLDDALKLTERPELANKVDMIWIVGGSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF :::::::: :::::::::::::::::::: :::::::::::::::::::::: : ::::: CCDS29 VYKEAMNHLGHLKLFVTRIMQDFESDTFFSEIDLEKYKLLPEYPGVLSDVQEGKHIKYKF 130 140 150 160 170 180 pF1KE1 EVYEKND :: ::.: CCDS29 EVCEKDD >>CCDS78028.1 DHFR gene_id:1719|Hs108|chr5 (135 aa) initn: 904 init1: 904 opt: 904 Z-score: 1198.9 bits: 228.0 E(32554): 1.9e-60 Smith-Waterman score: 904; 100.0% identity (100.0% similar) in 135 aa overlap (53-187:1-135) 30 40 50 60 70 80 pF1KE1 LPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKE :::::::::::::::::::::::::::::: CCDS78 MGKKTWFSIPEKNRPLKGRINLVLSRELKE 10 20 30 90 100 110 120 130 140 pF1KE1 PPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 PPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQD 40 50 60 70 80 90 150 160 170 180 pF1KE1 FESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND ::::::::::::::::::::::::::::::::::::::::::::: CCDS78 FESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND 100 110 120 130 >>CCDS78029.1 DHFR gene_id:1719|Hs108|chr5 (129 aa) initn: 825 init1: 825 opt: 825 Z-score: 1095.1 bits: 208.8 E(32554): 1.1e-54 Smith-Waterman score: 825; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123) 10 20 30 40 50 60 pF1KE1 MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF ::: CCDS78 VYKIPRCSL 187 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:08:32 2016 done: Mon Nov 7 03:08:33 2016 Total Scan time: 2.030 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]