FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6304, 443 aa
  1>>>pF1KE6304 443 - 443 aa - 443 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7519+/-0.000722; mu= 15.4623+/- 0.043
 mean_var=71.5575+/-14.380, 0's: 0 Z-trim(109.6): 16  B-trim: 3 in 1/51
 Lambda= 0.151617
 statistics sampled from 10987 (10991) to 10987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.338), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS11166.1 COX10 gene_id:1352|Hs108|chr17         ( 443) 3007 666.7 1.3e-191


>>CCDS11166.1 COX10 gene_id:1352|Hs108|chr17              (443 aa)
 initn: 3007 init1: 3007 opt: 3007  Z-score: 3553.5  bits: 666.7 E(32554): 1.3e-191
Smith-Waterman score: 3007; 99.8% identity (100.0% similar) in 443 aa overlap (1-443:1-443)

               10        20        30        40        50        60
pF1KE6 MAASPHTLSSRLLTGCVGGSVWYLERRTIQDSPHKFLHLLRNVNKQWITFQHFSFLKRMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAASPHTLSSRLLTGCVGGSVWYLERRTIQDSPHKFLHLLRNVNKQWITFQHFSFLKRMY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VTQLNRSHNQQVRPKPEPVASPFLEKTSSGQAKAEIYEMRPLSPPSLSLSRKPNEKELIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VTQLNRSHNQQVRPKPEPVASPFLEKTSSGQAKAEIYEMRPLSPPSLSLSRKPNEKELIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LEPDSVIEDSIDVGKETKEEKRWKEMKLQVYDLPGILAQLSKIKLTALVVSTTAAGFALA
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS11 LEPDSVIEDSIDVGKETKEEKRWKEMKLQVYDLPGILARLSKIKLTALVVSTTAAGFALA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 PGPFDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PGPFDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 TCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAIPPVMGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAIPPVMGW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 TAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPGLCRRVALRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPGLCRRVALRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 CLALLVLSAAAPVLDITTWTFPIMALPINAYISYLGFRFYVDADRRSSRRLFFCSLWHLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CLALLVLSAAAPVLDITTWTFPIMALPINAYISYLGFRFYVDADRRSSRRLFFCSLWHLP
              370       380       390       400       410       420

              430       440   
pF1KE6 LLLLLMLTCKRPSGGGDAGPPPS
       :::::::::::::::::::::::
CCDS11 LLLLLMLTCKRPSGGGDAGPPPS
              430       440   




443 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:55:15 2016 done: Tue Nov  8 11:55:15 2016
 Total Scan time:  2.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]