FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4409, 423 aa 1>>>pF1KE4409 423 - 423 aa - 423 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0325+/-0.000329; mu= 19.0636+/- 0.020 mean_var=63.2169+/-13.124, 0's: 0 Z-trim(115.6): 33 B-trim: 1297 in 1/51 Lambda= 0.161309 statistics sampled from 26059 (26085) to 26059 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.306), width: 16 Scan time: 7.960 The best scores are: opt bits E(85289) NP_003071 (OMIM: 603498) sphingomyelin phosphodies ( 423) 2917 687.3 1.9e-197 XP_011534381 (OMIM: 603498) PREDICTED: sphingomyel ( 318) 2181 516.0 5.5e-146 XP_005267166 (OMIM: 603498) PREDICTED: sphingomyel ( 243) 1670 397.0 2.8e-110 >>NP_003071 (OMIM: 603498) sphingomyelin phosphodiestera (423 aa) initn: 2917 init1: 2917 opt: 2917 Z-score: 3665.7 bits: 687.3 E(85289): 1.9e-197 Smith-Waterman score: 2917; 99.8% identity (99.8% similar) in 423 aa overlap (1-423:1-423) 10 20 30 40 50 60 pF1KE4 MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 QKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 QKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 MHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 LYKAVSGFYISCKSFETTTGFDPHSGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERS :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: NP_003 LYKAVSGFYISCKSFETTTGFDPHRGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 PLMCVLKEAWTELGLGMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 PLMCVLKEAWTELGLGMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 SVGLVLWAGAFYLFHVQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SVGLVLWAGAFYLFHVQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRT 370 380 390 400 410 420 pF1KE4 KEQ ::: NP_003 KEQ >>XP_011534381 (OMIM: 603498) PREDICTED: sphingomyelin p (318 aa) initn: 2181 init1: 2181 opt: 2181 Z-score: 2741.9 bits: 516.0 E(85289): 5.5e-146 Smith-Waterman score: 2181; 99.7% identity (99.7% similar) in 318 aa overlap (106-423:1-318) 80 90 100 110 120 130 pF1KE4 GIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGLLVLHLSGMVLNAYVT :::::::::::::::::::::::::::::: XP_011 MIHHGDWFSGKAVGLLVLHLSGMVLNAYVT 10 20 30 140 150 160 170 180 190 pF1KE4 HLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLNMHPEDLGCCLLKEWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLNMHPEDLGCCLLKEWT 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE4 GLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYVLYKAVSGFYISCKSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYVLYKAVSGFYISCKSF 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE4 ETTTGFDPHSGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERSPLMCVLKEAWTELGL ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ETTTGFDPHRGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERSPLMCVLKEAWTELGL 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE4 GMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTPSVGLVLWAGAFYLFH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTPSVGLVLWAGAFYLFH 220 230 240 250 260 270 380 390 400 410 420 pF1KE4 VQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRTKEQ :::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRTKEQ 280 290 300 310 >>XP_005267166 (OMIM: 603498) PREDICTED: sphingomyelin p (243 aa) initn: 1670 init1: 1670 opt: 1670 Z-score: 2100.9 bits: 397.0 E(85289): 2.8e-110 Smith-Waterman score: 1670; 99.6% identity (99.6% similar) in 243 aa overlap (181-423:1-243) 160 170 180 190 200 210 pF1KE4 HRVAQAWELAQFIHHTSKKADVVLLCGDLNMHPEDLGCCLLKEWTGLHDAYLETRDFKGS :::::::::::::::::::::::::::::: XP_005 MHPEDLGCCLLKEWTGLHDAYLETRDFKGS 10 20 30 220 230 240 250 260 270 pF1KE4 EEGNTMVPKNCYVSQQELKPFPFGVRIDYVLYKAVSGFYISCKSFETTTGFDPHSGTPLS :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: XP_005 EEGNTMVPKNCYVSQQELKPFPFGVRIDYVLYKAVSGFYISCKSFETTTGFDPHRGTPLS 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE4 DHEALMATLFVRHSPPQQNPSSTHGPAERSPLMCVLKEAWTELGLGMAQARWWATFASYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DHEALMATLFVRHSPPQQNPSSTHGPAERSPLMCVLKEAWTELGLGMAQARWWATFASYV 100 110 120 130 140 150 340 350 360 370 380 390 pF1KE4 IGLGLLLLALLCVLAAGGGAGEAAILLWTPSVGLVLWAGAFYLFHVQEVNGLYRAQAELQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IGLGLLLLALLCVLAAGGGAGEAAILLWTPSVGLVLWAGAFYLFHVQEVNGLYRAQAELQ 160 170 180 190 200 210 400 410 420 pF1KE4 HVLGRAREAQDLGPEPQPALLLGQQEGDRTKEQ ::::::::::::::::::::::::::::::::: XP_005 HVLGRAREAQDLGPEPQPALLLGQQEGDRTKEQ 220 230 240 423 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:43:56 2016 done: Sun Nov 6 00:43:58 2016 Total Scan time: 7.960 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]