FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4409, 423 aa 1>>>pF1KE4409 423 - 423 aa - 423 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1145+/-0.000725; mu= 18.6957+/- 0.044 mean_var=64.7083+/-13.070, 0's: 0 Z-trim(108.9): 11 B-trim: 2 in 1/50 Lambda= 0.159439 statistics sampled from 10483 (10490) to 10483 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.322), width: 16 Scan time: 2.290 The best scores are: opt bits E(32554) CCDS5075.1 SMPD2 gene_id:6610|Hs108|chr6 ( 423) 2917 679.5 1.7e-195 >>CCDS5075.1 SMPD2 gene_id:6610|Hs108|chr6 (423 aa) initn: 2917 init1: 2917 opt: 2917 Z-score: 3623.4 bits: 679.5 E(32554): 1.7e-195 Smith-Waterman score: 2917; 99.8% identity (99.8% similar) in 423 aa overlap (1-423:1-423) 10 20 30 40 50 60 pF1KE4 MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 QKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 QKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 LVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 MHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 MHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 LYKAVSGFYISCKSFETTTGFDPHSGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERS :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: CCDS50 LYKAVSGFYISCKSFETTTGFDPHRGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 PLMCVLKEAWTELGLGMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 PLMCVLKEAWTELGLGMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 SVGLVLWAGAFYLFHVQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 SVGLVLWAGAFYLFHVQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRT 370 380 390 400 410 420 pF1KE4 KEQ ::: CCDS50 KEQ 423 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:43:56 2016 done: Sun Nov 6 00:43:56 2016 Total Scan time: 2.290 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]