FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7560, 272 aa 1>>>pF1KB7560 272 - 272 aa - 272 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1492+/-0.000282; mu= 8.7717+/- 0.018 mean_var=144.5640+/-29.316, 0's: 0 Z-trim(123.3): 1 B-trim: 2126 in 1/54 Lambda= 0.106670 statistics sampled from 42930 (42931) to 42930 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.503), width: 16 Scan time: 8.460 The best scores are: opt bits E(85289) NP_000529 (OMIM: 209920,601861) regulatory factor ( 272) 1804 288.1 1.2e-77 >>NP_000529 (OMIM: 209920,601861) regulatory factor X-as (272 aa) initn: 1804 init1: 1804 opt: 1804 Z-score: 1515.1 bits: 288.1 E(85289): 1.2e-77 Smith-Waterman score: 1804; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272) 10 20 30 40 50 60 pF1KB7 MEAQGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MEAQGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 PGGSVGAGKPVRYLCEGAGDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PGGSVGAGKPVRYLCEGAGDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 EGSSGGARRRGSGGGSMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 EGSSGGARRRGSGGGSMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 QALNCGGTASTGSAGNVKLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 QALNCGGTASTGSAGNVKLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLR 190 200 210 220 230 240 250 260 270 pF1KB7 SPEVVQFLQKQQQLLNQQVLEQRQQQFPGTSM :::::::::::::::::::::::::::::::: NP_000 SPEVVQFLQKQQQLLNQQVLEQRQQQFPGTSM 250 260 270 272 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:12:11 2016 done: Mon Nov 7 03:12:12 2016 Total Scan time: 8.460 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]