FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7560, 272 aa 1>>>pF1KB7560 272 - 272 aa - 272 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9539+/-0.000696; mu= 10.2078+/- 0.042 mean_var=144.8885+/-29.385, 0's: 0 Z-trim(116.0): 4 B-trim: 734 in 2/50 Lambda= 0.106551 statistics sampled from 16608 (16609) to 16608 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.51), width: 16 Scan time: 2.690 The best scores are: opt bits E(32554) CCDS9359.1 RFXAP gene_id:5994|Hs108|chr13 ( 272) 1804 287.7 5.8e-78 >>CCDS9359.1 RFXAP gene_id:5994|Hs108|chr13 (272 aa) initn: 1804 init1: 1804 opt: 1804 Z-score: 1513.1 bits: 287.7 E(32554): 5.8e-78 Smith-Waterman score: 1804; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272) 10 20 30 40 50 60 pF1KB7 MEAQGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 MEAQGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 PGGSVGAGKPVRYLCEGAGDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 PGGSVGAGKPVRYLCEGAGDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 EGSSGGARRRGSGGGSMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 EGSSGGARRRGSGGGSMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 QALNCGGTASTGSAGNVKLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 QALNCGGTASTGSAGNVKLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLR 190 200 210 220 230 240 250 260 270 pF1KB7 SPEVVQFLQKQQQLLNQQVLEQRQQQFPGTSM :::::::::::::::::::::::::::::::: CCDS93 SPEVVQFLQKQQQLLNQQVLEQRQQQFPGTSM 250 260 270 272 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:12:10 2016 done: Mon Nov 7 03:12:10 2016 Total Scan time: 2.690 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]