(Circular) (Six-base) MAPSORT of: pFN21AE0626.seq Check: 32 from: 1 to: 5821 pFN21AE0626 5821 bp With 182 enzymes: SgfI * April 15, 2010 09:37 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3631 278 Size: 53 83 186 936 2095 2468 Fragments arranged by size: 2468 2095 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2807 3164 1937 Size: 870 357 4594 Fragments arranged by size: 4594 870 357 Acc65I G'GTAC_C Cuts at: 3142 3142 Size: 5821 AclI AA'CG_TT Cuts at: 1563 3948 4321 1563 Size: 2385 373 3063 Fragments arranged by size: 3063 2385 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3884 5268 5536 1632 Size: 2252 1384 268 1917 Fragments arranged by size: 2252 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5624 AflIII A'CryG_T Cuts at: 1203 2149 4720 5697 1203 Size: 946 2571 977 1327 Fragments arranged by size: 2571 1327 977 946 AgeI A'CCGG_T Cuts at: 4652 4652 Size: 5821 AhdI GACnn_n'nnGTC Cuts at: 4550 4550 Size: 5821 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5821 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5821 AlwNI CAG_nnn'CTG Cuts at: 2040 3564 5136 2040 Size: 1524 1572 2725 Fragments arranged by size: 2725 1572 1524 ApaLI G'TGCA_C Cuts at: 3878 5034 3878 Size: 1156 4665 ApoI r'AATT_y Cuts at: 1493 2081 2120 3059 3130 3356 3508 5617 1493 Size: 588 39 939 71 226 152 2109 1697 Fragments arranged by size: 2109 1697 939 588 226 152 71 39 AseI AT'TA_AT Cuts at: 160 1032 4375 160 Size: 872 3343 1606 Fragments arranged by size: 3343 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5821 AvaI C'yCGr_G Cuts at: 1870 1943 3146 1870 Size: 73 1203 4545 Fragments arranged by size: 4545 1203 73 AvrII C'CTAG_G Cuts at: 2509 2509 Size: 5821 BamHI G'GATC_C Cuts at: 3151 3518 3151 Size: 367 5454 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3142 4597 618 Size: 325 217 627 1355 1455 1842 Fragments arranged by size: 1842 1455 1355 627 325 217 BanII G_rGCy'C Cuts at: 1391 3140 1391 Size: 1749 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2424 2877 2907 928 Size: 971 525 453 30 3842 Fragments arranged by size: 3842 971 525 453 30 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 4012 4046 1903 Size: 34 2075 34 3678 Fragments arranged by size: 3678 2075 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3713 4923 3713 Size: 1210 4611 BclI T'GATC_A Cuts at: 1548 2689 1548 Size: 1141 4680 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2826 4432 136 Size: 107 122 71 631 605 1154 1606 1525 Fragments arranged by size: 1606 1525 1154 631 605 122 107 71 BglII A'GATC_T Cuts at: 5816 5816 Size: 5821 BlpI GC'TnA_GC Cuts at: 2978 3028 3238 2978 Size: 50 210 5561 Fragments arranged by size: 5561 210 50 Bme1580I G_kGCm'C Cuts at: 1790 2051 3882 5038 1790 Size: 261 1831 1156 2573 Fragments arranged by size: 2573 1831 1156 261 BmgBI CAC'GTC Cuts at: 1318 2446 1318 Size: 1128 4693 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3552 4510 442 Size: 416 53 83 399 24 2135 958 1753 Fragments arranged by size: 2135 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5821 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2518 2975 3060 4481 1239 Size: 1279 457 85 1421 2579 Fragments arranged by size: 2579 1421 1279 457 85 Bpu10I CC'TnA_GC Cuts at: 2270 2270 Size: 5821 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3946 4811 5109 3946 Size: 865 298 4658 Fragments arranged by size: 4658 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2737 4484 882 Size: 617 1238 1747 2219 Fragments arranged by size: 2219 1747 1238 617 BsaAI yAC'GTr Cuts at: 493 1204 3612 493 Size: 711 2408 2702 Fragments arranged by size: 2702 2408 711 BsaBI GATnn'nnATC Cuts at: 2235 5815 2235 Size: 3580 2241 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3628 4010 4645 275 Size: 53 83 186 936 2095 382 635 1451 Fragments arranged by size: 2095 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2798 4254 4652 4926 5073 5484 2798 Size: 1456 398 274 147 411 3135 Fragments arranged by size: 3135 1456 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 3058 3088 1178 Size: 30 165 30 1655 30 3911 Fragments arranged by size: 3911 1655 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2141 1186 Size: 955 4866 BseYI C'CCAG_C Cuts at: 5024 5520 5024 Size: 496 5325 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5248 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3271 4032 5060 1540 Size: 275 186 1270 761 1028 2301 Fragments arranged by size: 2301 1270 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3882 3967 5038 3882 Size: 85 1071 4665 Fragments arranged by size: 4665 1071 85 BsmI GAATG_Cn' Cuts at: 3332 3425 3332 Size: 93 5728 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2051 3140 3882 3967 5038 1391 Size: 399 261 1089 742 85 1071 2174 Fragments arranged by size: 2174 1089 1071 742 399 261 85 BspEI T'CCGG_A Cuts at: 5484 5484 Size: 5821 BspHI T'CATG_A Cuts at: 3710 5440 3710 Size: 1730 4091 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3176 844 Size: 2332 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3708 1394 Size: 429 1885 3507 Fragments arranged by size: 3507 1885 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4316 4490 65 Size: 1183 3068 174 1396 Fragments arranged by size: 3068 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2019 2746 4465 4652 1700 Size: 110 209 727 1719 187 2869 Fragments arranged by size: 2869 1719 727 209 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5821 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5821 BssSI C'ACGA_G Cuts at: 3881 4893 3881 Size: 1012 4809 BstAPI GCAn_nnn'nTGC Cuts at: 794 2040 794 Size: 1246 4575 BstBI TT'CG_AA Cuts at: 4625 4625 Size: 5821 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5821 BstYI r'GATC_y Cuts at: 1972 2160 2577 3151 3518 3903 3920 5372 5458 Size: 188 417 574 367 385 17 1452 86 Cuts at: 5458 5470 5816 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 574 417 385 367 346 188 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2200 513 Size: 552 1135 4134 Fragments arranged by size: 4134 1135 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5082 Fragments arranged by size: 5082 683 56 BtsI GCAGTG_nn' Cuts at: 2264 3337 4131 4151 2264 Size: 1073 794 20 3934 Fragments arranged by size: 3934 1073 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5821 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5786 DraI TTT'AAA Cuts at: 3125 3125 Size: 5821 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4828 809 Size: 507 3512 1802 Fragments arranged by size: 3512 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2256 3268 4157 Size: 54 1425 50 275 18 426 1012 889 Cuts at: 4157 5786 8 Size: 1629 43 Fragments arranged by size: 1629 1425 1012 889 426 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3268 1537 Size: 275 1456 4090 Fragments arranged by size: 4090 1456 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2057 2675 3751 1353 Size: 704 618 1076 3423 Fragments arranged by size: 3423 1076 704 618 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4408 4782 4928 387 Size: 1064 138 2819 374 146 1280 Fragments arranged by size: 2819 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2518 2975 3060 3884 4481 5268 5536 Size: 393 886 457 85 824 597 787 268 Cuts at: 5536 1239 Size: 1524 Fragments arranged by size: 1524 886 824 787 597 457 393 268 85 EcoRI G'AATT_C Cuts at: 3130 3508 3130 Size: 378 5443 FspI TGC'GCA Cuts at: 4327 4327 Size: 5821 HaeII r_GCGC'y Cuts at: 1678 4968 1678 Size: 3290 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2505 2537 2674 2706 2764 Size: 32 135 32 933 32 137 32 58 Cuts at: 2764 2796 4462 4494 4536 4568 1373 Size: 32 1666 32 42 32 2626 Fragments arranged by size: 2626 1666 933 137 135 58 42 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2173 3165 3411 669 Size: 988 281 235 992 246 3079 Fragments arranged by size: 3079 992 988 281 246 235 HindIII A'AGCT_T Cuts at: 748 2851 2980 748 Size: 2103 129 3589 Fragments arranged by size: 3589 2103 129 HpaI GTT'AAC Cuts at: 3411 3411 Size: 5821 KpnI G_GTAC'C Cuts at: 3146 3146 Size: 5821 MfeI C'AATT_G Cuts at: 3420 3420 Size: 5821 MluI A'CGCG_T Cuts at: 5697 5697 Size: 5821 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2762 4935 5119 1305 Size: 1457 2173 184 2007 Fragments arranged by size: 2173 2007 1457 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3999 Fragments arranged by size: 3999 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2405 2738 3779 4138 4297 518 Size: 648 1239 333 1041 359 159 2042 Fragments arranged by size: 2042 1239 1041 648 359 333 159 MspA1I CmG'CkG Cuts at: 1606 2037 3237 3914 5062 5307 1606 Size: 431 1200 677 1148 245 2120 Fragments arranged by size: 2120 1200 1148 677 431 245 NcoI C'CATG_G Cuts at: 513 1065 2200 513 Size: 552 1135 4134 Fragments arranged by size: 4134 1135 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5821 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5821 NotI GC'GGCC_GC Cuts at: 3268 3268 Size: 5821 NspI r_CATG'y Cuts at: 1132 1229 2153 3074 3179 4724 1132 Size: 97 924 921 105 1545 2229 Fragments arranged by size: 2229 1545 924 921 105 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5821 PciI A'CATG_T Cuts at: 2149 4720 2149 Size: 2571 3250 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5821 PfoI T'CCnGG_A Cuts at: 2523 2523 Size: 5821 PmeI GTTT'AAAC Cuts at: 3125 3125 Size: 5821 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3890 3922 5403 5435 3890 Size: 32 1481 32 4276 Fragments arranged by size: 4276 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2428 1613 Size: 815 5006 PsiI TTA'TAA Cuts at: 3391 3391 Size: 5821 PstI C_TGCA'G Cuts at: 830 3173 830 Size: 2343 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5821 SalI G'TCGA_C Cuts at: 1936 3163 1936 Size: 1227 4594 SapI GCTCTTCn'nnn_ Cuts at: 2057 2675 2057 Size: 618 5203 SbfI CC_TGCA'GG Cuts at: 3173 3173 Size: 5821 ScaI AGT'ACT Cuts at: 4069 5781 4069 Size: 1712 4109 SfcI C'TryA_G Cuts at: 826 1045 2305 3169 4304 4985 5176 826 Size: 219 1260 864 1135 681 191 1471 Fragments arranged by size: 1471 1260 1135 864 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5821 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5821 SmaI CCC'GGG Cuts at: 1872 3148 1872 Size: 1276 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3925 4826 5088 820 Size: 197 926 1982 901 262 1553 Fragments arranged by size: 1982 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3612 493 Size: 3119 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5821 SphI G_CATG'C Cuts at: 1132 3179 1132 Size: 2047 3774 SspI AAT'ATT Cuts at: 5 52 3745 5 Size: 47 3693 2081 Fragments arranged by size: 3693 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5821 StyI C'CwwG_G Cuts at: 513 1065 2200 2509 3260 513 Size: 552 1135 309 751 3074 Fragments arranged by size: 3074 1135 751 552 309 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3848 3865 4018 4203 4648 325 Size: 1255 2268 17 153 185 445 1498 Fragments arranged by size: 2268 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2618 4067 5779 Size: 274 80 33 51 1443 641 1449 1712 Cuts at: 5779 96 Size: 138 Fragments arranged by size: 1712 1449 1443 641 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5781 5813 5781 Size: 32 5789 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5821 XbaI T'CTAG_A Cuts at: 3157 3157 Size: 5821 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5821 XmaI C'CCGG_G Cuts at: 1870 3146 1870 Size: 1276 4545 XmnI GAAnn'nnTTC Cuts at: 2568 3950 2568 Size: 1382 4439 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3629 276 Size: 53 83 186 936 2095 2468 Fragments arranged by size: 2468 2095 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI XcmI