(Circular) (Six-base) MAPSORT of: pFN21AE3604.seq Check: 3320 from: 1 to: 5767 pFN21AE3604 5767 bp With 182 enzymes: SgfI * December 28, 2011 15:25 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3577 278 Size: 53 83 186 936 2041 2468 Fragments arranged by size: 2468 2041 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2736 3110 1937 Size: 799 374 4594 Fragments arranged by size: 4594 799 374 Acc65I G'GTAC_C Cuts at: 2148 3088 2148 Size: 940 4827 AclI AA'CG_TT Cuts at: 1563 3894 4267 1563 Size: 2331 373 3063 Fragments arranged by size: 3063 2331 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2019 2028 2825 3830 5214 5482 1632 Size: 387 9 797 1005 1384 268 1917 Fragments arranged by size: 1917 1384 1005 797 387 268 9 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5570 AflIII A'CryG_T Cuts at: 1203 2189 4666 5643 1203 Size: 986 2477 977 1327 Fragments arranged by size: 2477 1327 986 977 AgeI A'CCGG_T Cuts at: 4598 4598 Size: 5767 AhdI GACnn_n'nnGTC Cuts at: 4496 4496 Size: 5767 AleI CACnn'nnGTG Cuts at: 1166 2602 1166 Size: 1436 4331 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5767 AlwNI CAG_nnn'CTG Cuts at: 2583 3510 5082 2583 Size: 927 1572 3268 Fragments arranged by size: 3268 1572 927 ApaLI G'TGCA_C Cuts at: 3824 4980 3824 Size: 1156 4611 ApoI r'AATT_y Cuts at: 1493 2023 2535 2660 3076 3302 3454 5563 1493 Size: 530 512 125 416 226 152 2109 1697 Fragments arranged by size: 2109 1697 530 512 416 226 152 125 AseI AT'TA_AT Cuts at: 160 1032 4321 160 Size: 872 3289 1606 Fragments arranged by size: 3289 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5767 AvaI C'yCGr_G Cuts at: 1870 1943 3092 1870 Size: 73 1149 4545 Fragments arranged by size: 4545 1149 73 BamHI G'GATC_C Cuts at: 3097 3464 3097 Size: 367 5400 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2148 3088 4543 618 Size: 325 217 627 361 940 1455 1842 Fragments arranged by size: 1842 1455 940 627 361 325 217 BanII G_rGCy'C Cuts at: 1391 3086 1391 Size: 1695 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2754 928 Size: 971 855 3941 Fragments arranged by size: 3941 971 855 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3958 3992 1903 Size: 34 2021 34 3678 Fragments arranged by size: 3678 2021 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3659 4869 3659 Size: 1210 4557 BclI T'GATC_A Cuts at: 1548 1548 Size: 5767 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2141 2160 4378 Size: 107 122 71 631 605 469 19 2218 Cuts at: 4378 136 Size: 1525 Fragments arranged by size: 2218 1525 631 605 469 122 107 71 19 BglII A'GATC_T Cuts at: 5762 5762 Size: 5767 BlpI GC'TnA_GC Cuts at: 3184 3184 Size: 5767 Bme1580I G_kGCm'C Cuts at: 1790 2189 3008 3828 4984 1790 Size: 399 819 820 1156 2573 Fragments arranged by size: 2573 1156 820 819 399 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5767 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2089 3498 4456 Size: 416 53 83 399 24 672 1409 958 Cuts at: 4456 442 Size: 1753 Fragments arranged by size: 1753 1409 958 672 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5767 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2453 2921 3008 3020 3084 4427 1239 Size: 1214 468 87 12 64 1343 2579 Fragments arranged by size: 2579 1343 1214 468 87 64 12 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3892 4757 5055 3892 Size: 865 298 4604 Fragments arranged by size: 4604 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4430 882 Size: 617 2931 2219 Fragments arranged by size: 2931 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3558 493 Size: 711 2354 2702 Fragments arranged by size: 2702 2354 711 BsaBI GATnn'nnATC Cuts at: 5761 5761 Size: 5767 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3574 3956 4591 275 Size: 53 83 186 936 2041 382 635 1451 Fragments arranged by size: 2041 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4200 4598 4872 5019 5430 4200 Size: 398 274 147 411 4537 Fragments arranged by size: 4537 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5542 Fragments arranged by size: 5542 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2924 1186 Size: 1738 4029 BseYI C'CCAG_C Cuts at: 2312 2904 2910 3048 4970 5466 2312 Size: 592 6 138 1922 496 2613 Fragments arranged by size: 2613 1922 592 496 138 6 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2569 1163 Size: 573 833 4361 Fragments arranged by size: 4361 833 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2736 3217 3978 5006 1540 Size: 275 186 735 481 761 1028 2301 Fragments arranged by size: 2301 1028 761 735 481 275 186 BsiHKAI G_wGCw'C Cuts at: 3828 3913 4984 3828 Size: 85 1071 4611 Fragments arranged by size: 4611 1071 85 BsmI GAATG_Cn' Cuts at: 3278 3371 3278 Size: 93 5674 BsmBI CGTCTCn'nnnn_ Cuts at: 2889 2889 Size: 5767 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2189 3008 3086 3828 3913 4984 1391 Size: 399 399 819 78 742 85 1071 2174 Fragments arranged by size: 2174 1071 819 742 399 399 85 78 BspEI T'CCGG_A Cuts at: 5430 5430 Size: 5767 BspHI T'CATG_A Cuts at: 3656 5386 3656 Size: 1730 4037 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3122 844 Size: 2278 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3654 1394 Size: 429 1831 3507 Fragments arranged by size: 3507 1831 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4262 4436 65 Size: 1183 3014 174 1396 Fragments arranged by size: 3014 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4411 4598 1700 Size: 110 2601 187 2869 Fragments arranged by size: 2869 2601 187 110 BsrGI T'GTAC_A Cuts at: 96 2383 96 Size: 2287 3480 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5767 BssSI C'ACGA_G Cuts at: 3827 4839 3827 Size: 1012 4755 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5767 BstBI TT'CG_AA Cuts at: 4571 4571 Size: 5767 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5767 BstYI r'GATC_y Cuts at: 1972 2770 3097 3464 3849 3866 5318 5404 5416 Size: 798 327 367 385 17 1452 86 12 Cuts at: 5416 5762 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 798 385 367 346 327 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 5215 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2225 487 Size: 683 56 999 4029 Fragments arranged by size: 4029 999 683 56 BtsI GCAGTG_nn' Cuts at: 2597 2609 2637 3283 4077 4097 2597 Size: 12 28 646 794 20 4267 Fragments arranged by size: 4267 794 646 28 20 12 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5767 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5732 DraI TTT'AAA Cuts at: 3071 3071 Size: 5767 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4774 809 Size: 507 3458 1802 Fragments arranged by size: 3458 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2392 3214 4103 Size: 54 1425 50 275 18 562 822 889 Cuts at: 4103 5732 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 822 562 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3214 1537 Size: 275 1402 4090 Fragments arranged by size: 4090 1402 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2844 3697 1353 Size: 1491 853 3423 Fragments arranged by size: 3423 1491 853 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4354 4728 4874 387 Size: 1064 138 2765 374 146 1280 Fragments arranged by size: 2765 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2019 2028 2453 2825 2921 3008 3020 Size: 393 387 9 425 372 96 87 12 Cuts at: 3020 3084 3830 4427 5214 5482 1239 Size: 64 746 597 787 268 1524 Fragments arranged by size: 1524 787 746 597 425 393 387 372 268 96 87 64 12 9 EcoNI CCTnn'n_nnAGG Cuts at: 2936 2936 Size: 5767 EcoO109I rG'GnC_Cy Cuts at: 2920 2920 Size: 5767 EcoRI G'AATT_C Cuts at: 3076 3454 3076 Size: 378 5389 EcoRV GAT'ATC Cuts at: 2350 2350 Size: 5767 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2110 2110 Size: 5767 FspI TGC'GCA Cuts at: 4273 4273 Size: 5767 HaeII r_GCGC'y Cuts at: 1678 2166 4914 1678 Size: 488 2748 2531 Fragments arranged by size: 2748 2531 488 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2762 2788 2794 2820 4408 Size: 32 135 32 1190 26 6 26 1588 Cuts at: 4408 4440 4482 4514 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1588 1190 135 42 32 32 32 32 26 26 6 HincII GTy'rAC Cuts at: 669 1657 1938 2737 3111 3357 669 Size: 988 281 799 374 246 3079 Fragments arranged by size: 3079 988 799 374 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5767 HpaI GTT'AAC Cuts at: 3357 3357 Size: 5767 KpnI G_GTAC'C Cuts at: 2152 3092 2152 Size: 940 4827 MfeI C'AATT_G Cuts at: 3366 3366 Size: 5767 MluI A'CGCG_T Cuts at: 5643 5643 Size: 5767 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4881 5065 1305 Size: 3576 184 2007 Fragments arranged by size: 3576 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2394 10 Size: 54 1425 343 562 3383 Fragments arranged by size: 3383 1425 562 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2602 3725 4084 4243 518 Size: 648 1436 1123 359 159 2042 Fragments arranged by size: 2042 1436 1123 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2821 3183 3860 5008 5253 1606 Size: 1215 362 677 1148 245 2120 Fragments arranged by size: 2120 1215 1148 677 362 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5215 NdeI CA'TA_TG Cuts at: 387 387 Size: 5767 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5767 NotI GC'GGCC_GC Cuts at: 3214 3214 Size: 5767 NspI r_CATG'y Cuts at: 1132 1229 3033 3125 4670 1132 Size: 97 1804 92 1545 2229 Fragments arranged by size: 2229 1804 1545 97 92 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5767 PciI A'CATG_T Cuts at: 4666 4666 Size: 5767 PflMI CCAn_nnn'nTGG Cuts at: 1108 2767 1108 Size: 1659 4108 PfoI T'CCnGG_A Cuts at: 2766 2766 Size: 5767 PmeI GTTT'AAAC Cuts at: 3071 3071 Size: 5767 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3836 3868 5349 5381 3836 Size: 32 1481 32 4222 Fragments arranged by size: 4222 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2920 2920 Size: 5767 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5767 PsiI TTA'TAA Cuts at: 3337 3337 Size: 5767 PstI C_TGCA'G Cuts at: 830 2451 2604 3119 830 Size: 1621 153 515 3478 Fragments arranged by size: 3478 1621 515 153 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5767 PvuII CAG'CTG Cuts at: 2821 2821 Size: 5767 SalI G'TCGA_C Cuts at: 1936 2735 3109 1936 Size: 799 374 4594 Fragments arranged by size: 4594 799 374 SbfI CC_TGCA'GG Cuts at: 3119 3119 Size: 5767 ScaI AGT'ACT Cuts at: 4015 5727 4015 Size: 1712 4055 SfcI C'TryA_G Cuts at: 826 1045 2447 2600 3115 4250 4931 5122 826 Size: 219 1402 153 515 1135 681 191 1471 Fragments arranged by size: 1471 1402 1135 681 515 219 191 153 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5767 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5767 SmaI CCC'GGG Cuts at: 1872 3094 1872 Size: 1222 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3871 4772 5034 820 Size: 197 926 1928 901 262 1553 Fragments arranged by size: 1928 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3558 493 Size: 3065 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5767 SphI G_CATG'C Cuts at: 1132 3033 3125 1132 Size: 1901 92 3774 Fragments arranged by size: 3774 1901 92 SspI AAT'ATT Cuts at: 5 52 3691 5 Size: 47 3639 2081 Fragments arranged by size: 3639 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5767 StyI C'CwwG_G Cuts at: 513 1065 3206 513 Size: 552 2141 3074 Fragments arranged by size: 3074 2141 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3794 3811 3964 4149 4594 325 Size: 1255 2214 17 153 185 445 1498 Fragments arranged by size: 2214 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2383 2866 4013 Size: 274 80 33 51 1443 406 483 1147 Cuts at: 4013 5725 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1147 483 406 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5727 5759 5727 Size: 32 5735 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5767 XbaI T'CTAG_A Cuts at: 3103 3103 Size: 5767 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2076 2076 Size: 5767 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5767 XmaI C'CCGG_G Cuts at: 1870 3092 1870 Size: 1222 4545 XmnI GAAnn'nnTTC Cuts at: 3896 3896 Size: 5767 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3575 276 Size: 53 83 186 936 2041 2468 Fragments arranged by size: 2468 2041 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI