Result of FASTA (ccds) for
pFN21AE3604
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3604, 354 aa
1>>>pF1KE3604 354 - 354 aa - 354 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3835+/-0.000862; mu= 3.2549+/- 0.052
mean_var=184.2137+/-36.485, 0's: 0 Z-trim(113.5): 23 B-trim: 71 in 1/52
Lambda= 0.094496
statistics sampled from 14076 (14092) to 14076 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.433), width: 16
Scan time: 2.870
The best scores are: opt bits E(32554)
CCDS45160.1 CCNK gene_id:8812|Hs108|chr14 ( 580) 2154 305.6 6.7e-83
CCDS8766.1 CCNT1 gene_id:904|Hs108|chr12 ( 726) 484 78.0 2.7e-14
CCDS2175.1 CCNT2 gene_id:905|Hs108|chr2 ( 663) 449 73.2 6.9e-13
CCDS2174.1 CCNT2 gene_id:905|Hs108|chr2 ( 730) 449 73.3 7.5e-13
>>CCDS45160.1 CCNK gene_id:8812|Hs108|chr14 (580 aa)
initn: 2194 init1: 2141 opt: 2154 Z-score: 1601.9 bits: 305.6 E(32554): 6.7e-83
Smith-Waterman score: 2154; 93.8% identity (95.0% similar) in 337 aa overlap (1-336:1-331)
10 20 30 40 50 60
pF1KE3 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKIEETPKKCKDIIKTA
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS45 GTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 LVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLQQPPSLQPTPQVPQVQQSQPSQSSEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLQQPPSLQPTPQVPQVQQSQPSQSSEPS
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 QPQQKDPLILLQGWACRQPATH-LLPSPLEDSLLCPRPFPHPACLQLGGWGGQPG
::::::: : .::: . ::: .: ::
CCDS45 QPQQKDPQ---QPAQQQQPAQQPKKPSPQPSS---PRQVKRAVVVSPKEENKAAEPPPPK
310 320 330 340 350
CCDS45 IPKIETTHPPLPPAHPPPDRKPPLAAALGEAEPPGPVDATDLPKVQIPPPAHPAPVHQPP
360 370 380 390 400 410
>>CCDS8766.1 CCNT1 gene_id:904|Hs108|chr12 (726 aa)
initn: 483 init1: 301 opt: 484 Z-score: 370.0 bits: 78.0 E(32554): 2.7e-14
Smith-Waterman score: 485; 32.7% identity (66.5% similar) in 260 aa overlap (24-275:12-254)
10 20 30 40 50 60
pF1KE3 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDV
::. ...: ..::. :.:: : ::...: .. :.
CCDS87 MEGERKNNNKRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDM
10 20 30 40
70 80 90 100 110 120
pF1KE3 GTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKIEETPKKCKDIIKTA
: ::.. :. :.:.:.:::::..:: ::: .. ::::.:.:: ::: . .::.:
CCDS87 GQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVA
50 60 70 80 90 100
130 140 150 160 170
pF1KE3 RSLLNDVQFGQFGDDPKE-------EVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKG
.. :. . .. : .: ....:: :.:::. :.: ..::. ..: .. ...
CCDS87 HTCLHPQE--SLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRA
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 DKNKIQKLVQMAWTFVNDSL-CTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYR
.:. :.: .. ....:: ::.:::. : ..: . ..:: ::. : . .
CCDS87 SKD----LAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLA---CKWSNWEIPVSTDGK
170 180 190 200 210
240 250 260 270 280 290
pF1KE3 RWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLQQPPSLQPTPQVPQVQQSQ
.::: : ...:... :..: :. ..::..:..
CCDS87 HWWEYVDATVTLELLDELTHEFL--------QILEKTPNRLKRIWNWRACEAAKKTKADD
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE3 PSQSSEPSQPQQKDPLILLQGWACRQPATHLLPSPLEDSLLCPRPFPHPACLQLGGWGGQ
CCDS87 RGTDEKTSEQTILNMISQSSSDTTIAGLMSMSTSTTSAVPSLPVSEESSSNLTSVEMLPG
280 290 300 310 320 330
>>CCDS2175.1 CCNT2 gene_id:905|Hs108|chr2 (663 aa)
initn: 410 init1: 260 opt: 449 Z-score: 344.8 bits: 73.2 E(32554): 6.9e-13
Smith-Waterman score: 449; 28.2% identity (63.0% similar) in 319 aa overlap (24-328:11-313)
10 20 30 40 50 60
pF1KE3 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDV
:.. ...: .:::. :.. : :...: .: ..
CCDS21 MASGRGASSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEM
10 20 30 40
70 80 90 100 110 120
pF1KE3 GTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKIEETPKKCKDIIKTA
: ::.. :. :.:.:.::::: ::: .: . . .. ::::.:.:: .: . .::.:
CCDS21 GQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVA
50 60 70 80 90 100
130 140 150 160 170
pF1KE3 RSLLN------DVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGD
.. :. :.. . .. .: ...:: :.:::. :.. .:::. ..: .. ....
CCDS21 HACLHPLEPLLDTKCDAYLQQTQE-LVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 KNKIQKLVQMAWTFVNDSL-CTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRR
:. :.: .. ....:: ::. ::..: .:: . ..:: ::. : . ..
CCDS21 KD----LAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLA---CKWSNWEIPVSTDGKH
170 180 190 200 210
240 250 260 270 280
pF1KE3 WWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLQQPPSLQPT-----PQVP-Q
::: : ...:... :..: :. ..::..:.. . . . :.: :
CCDS21 WWEYVDPTVTLELLDELTHEFL--------QILEKTPNRLKKIRNWRANQAARKPKVDGQ
220 230 240 250 260 270
290 300 310 320 330 340
pF1KE3 VQQSQPSQSSEPSQPQQKDPLILLQ-GWACRQPATHLLPSPLEDSLLCPRPFPHPACLQL
:... :: .. : . . . . ..:.: .:.:.
CCDS21 VSETPLLGSSLVQNSILVDSVTGVPTNPSFQKPSTSAFPAPVPLNSGNISVQDSHTSDNL
280 290 300 310 320 330
350
pF1KE3 GGWGGQPG
CCDS21 SMLATGMPSTSYGLSSHQEWPQHQDSARTEQLYSQKQETSLSGSQYNINFQQGPSISLHS
340 350 360 370 380 390
>>CCDS2174.1 CCNT2 gene_id:905|Hs108|chr2 (730 aa)
initn: 410 init1: 260 opt: 449 Z-score: 344.2 bits: 73.3 E(32554): 7.5e-13
Smith-Waterman score: 449; 28.2% identity (63.0% similar) in 319 aa overlap (24-328:11-313)
10 20 30 40 50 60
pF1KE3 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDV
:.. ...: .:::. :.. : :...: .: ..
CCDS21 MASGRGASSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEM
10 20 30 40
70 80 90 100 110 120
pF1KE3 GTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKIEETPKKCKDIIKTA
: ::.. :. :.:.:.::::: ::: .: . . .. ::::.:.:: .: . .::.:
CCDS21 GQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVA
50 60 70 80 90 100
130 140 150 160 170
pF1KE3 RSLLN------DVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGD
.. :. :.. . .. .: ...:: :.:::. :.. .:::. ..: .. ....
CCDS21 HACLHPLEPLLDTKCDAYLQQTQE-LVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 KNKIQKLVQMAWTFVNDSL-CTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRR
:. :.: .. ....:: ::. ::..: .:: . ..:: ::. : . ..
CCDS21 KD----LAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLA---CKWSNWEIPVSTDGKH
170 180 190 200 210
240 250 260 270 280
pF1KE3 WWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLQQPPSLQPT-----PQVP-Q
::: : ...:... :..: :. ..::..:.. . . . :.: :
CCDS21 WWEYVDPTVTLELLDELTHEFL--------QILEKTPNRLKKIRNWRANQAARKPKVDGQ
220 230 240 250 260 270
290 300 310 320 330 340
pF1KE3 VQQSQPSQSSEPSQPQQKDPLILLQ-GWACRQPATHLLPSPLEDSLLCPRPFPHPACLQL
:... :: .. : . . . . ..:.: .:.:.
CCDS21 VSETPLLGSSLVQNSILVDSVTGVPTNPSFQKPSTSAFPAPVPLNSGNISVQDSHTSDNL
280 290 300 310 320 330
350
pF1KE3 GGWGGQPG
CCDS21 SMLATGMPSTSYGLSSHQEWPQHQDSARTEQLYSQKQETSLSGSQYNINFQQGPSISLHS
340 350 360 370 380 390
354 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:18:52 2016 done: Mon Nov 7 03:18:53 2016
Total Scan time: 2.870 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]