FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3172, 403 aa 1>>>pF1KE3172 403 - 403 aa - 403 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4992+/-0.000431; mu= 11.5848+/- 0.027 mean_var=94.6560+/-18.839, 0's: 0 Z-trim(112.6): 37 B-trim: 26 in 1/52 Lambda= 0.131826 statistics sampled from 21536 (21551) to 21536 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.253), width: 16 Scan time: 8.650 The best scores are: opt bits E(85289) NP_060289 (OMIM: 615423,616974) mitochondrial ribo ( 403) 2656 515.6 8.3e-146 NP_689505 (OMIM: 616013,616033) tRNA methyltransfe ( 339) 275 62.8 1.5e-09 NP_001128138 (OMIM: 616013,616033) tRNA methyltran ( 339) 275 62.8 1.5e-09 NP_001128137 (OMIM: 616013,616033) tRNA methyltran ( 339) 275 62.8 1.5e-09 XP_005263409 (OMIM: 616013,616033) PREDICTED: tRNA ( 339) 275 62.8 1.5e-09 XP_006714480 (OMIM: 616013,616033) PREDICTED: tRNA ( 339) 275 62.8 1.5e-09 >>NP_060289 (OMIM: 615423,616974) mitochondrial ribonucl (403 aa) initn: 2656 init1: 2656 opt: 2656 Z-score: 2738.7 bits: 515.6 E(85289): 8.3e-146 Smith-Waterman score: 2656; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403) 10 20 30 40 50 60 pF1KE3 MAAFLKMSVSVNFFRPFTRFLVPFTLHRKRNNLTILQRYMSSKIPAVTYPKNESTPPSEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MAAFLKMSVSVNFFRPFTRFLVPFTLHRKRNNLTILQRYMSSKIPAVTYPKNESTPPSEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELKTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELKTL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 MECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 RLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 RLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 FHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 FHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 FRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 FRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRIL 310 320 330 340 350 360 370 380 390 400 pF1KE3 LCLKNNGNWQEALQFVPKRKHTGFLEISQHSQEFINRLKKAKT ::::::::::::::::::::::::::::::::::::::::::: NP_060 LCLKNNGNWQEALQFVPKRKHTGFLEISQHSQEFINRLKKAKT 370 380 390 400 >>NP_689505 (OMIM: 616013,616033) tRNA methyltransferase (339 aa) initn: 184 init1: 152 opt: 275 Z-score: 292.6 bits: 62.8 E(85289): 1.5e-09 Smith-Waterman score: 275; 25.3% identity (62.4% similar) in 245 aa overlap (140-380:38-276) 110 120 130 140 150 160 pF1KE3 EHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETT : ..: ::.:: .: :: .... . NP_689 AFIETSNVDKKQGINEDQEESQKPRLGEGCEPISK-RQMKKLIKQKQWEEQRELRKQKRK 10 20 30 40 50 60 170 180 190 200 210 220 pF1KE3 EEDKQKNFLFLRLWDRNMDIAMGWKGAQ--AMQFGQPLVFDMAYENYMKRKELQNTVSQL :. :.:.. . : : . : .. ... :..: .... : :.... .:. NP_689 EKRKRKKLERQCQMEPNSD-GHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKKLHKQI 70 80 90 100 110 120 230 240 250 260 270 280 pF1KE3 LESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHV-DLFPKDS . . ::: . : ..:. . : :.... . .. : . . : .:. :.. NP_689 QRCYAENRRALHPVQFYLTSH--GGQLKKNM-DENDKGWVNWKDIHIKPEHYSELIKKED 130 140 150 160 170 180 290 300 310 320 330 340 pF1KE3 IIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEI .::::.::::.. . ..:.::::..::.. . : . .:. .. ::: .... . NP_689 LIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMN- 190 200 210 220 230 240 350 360 370 380 390 400 pF1KE3 GNKNLTLDQMIRILLCLKNNGNWQEAL-QFVPKRKHTGFLEISQHSQEFINRLKKAKT . : :.......:.: .. .::::. ..:.:: NP_689 SRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEGG 250 260 270 280 290 300 NP_689 SDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 >>NP_001128138 (OMIM: 616013,616033) tRNA methyltransfer (339 aa) initn: 184 init1: 152 opt: 275 Z-score: 292.6 bits: 62.8 E(85289): 1.5e-09 Smith-Waterman score: 275; 25.3% identity (62.4% similar) in 245 aa overlap (140-380:38-276) 110 120 130 140 150 160 pF1KE3 EHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETT : ..: ::.:: .: :: .... . NP_001 AFIETSNVDKKQGINEDQEESQKPRLGEGCEPISK-RQMKKLIKQKQWEEQRELRKQKRK 10 20 30 40 50 60 170 180 190 200 210 220 pF1KE3 EEDKQKNFLFLRLWDRNMDIAMGWKGAQ--AMQFGQPLVFDMAYENYMKRKELQNTVSQL :. :.:.. . : : . : .. ... :..: .... : :.... .:. NP_001 EKRKRKKLERQCQMEPNSD-GHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKKLHKQI 70 80 90 100 110 120 230 240 250 260 270 280 pF1KE3 LESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHV-DLFPKDS . . ::: . : ..:. . : :.... . .. : . . : .:. :.. NP_001 QRCYAENRRALHPVQFYLTSH--GGQLKKNM-DENDKGWVNWKDIHIKPEHYSELIKKED 130 140 150 160 170 180 290 300 310 320 330 340 pF1KE3 IIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEI .::::.::::.. . ..:.::::..::.. . : . .:. .. ::: .... . NP_001 LIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMN- 190 200 210 220 230 240 350 360 370 380 390 400 pF1KE3 GNKNLTLDQMIRILLCLKNNGNWQEAL-QFVPKRKHTGFLEISQHSQEFINRLKKAKT . : :.......:.: .. .::::. ..:.:: NP_001 SRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEGG 250 260 270 280 290 300 NP_001 SDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 >>NP_001128137 (OMIM: 616013,616033) tRNA methyltransfer (339 aa) initn: 184 init1: 152 opt: 275 Z-score: 292.6 bits: 62.8 E(85289): 1.5e-09 Smith-Waterman score: 275; 25.3% identity (62.4% similar) in 245 aa overlap (140-380:38-276) 110 120 130 140 150 160 pF1KE3 EHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETT : ..: ::.:: .: :: .... . NP_001 AFIETSNVDKKQGINEDQEESQKPRLGEGCEPISK-RQMKKLIKQKQWEEQRELRKQKRK 10 20 30 40 50 60 170 180 190 200 210 220 pF1KE3 EEDKQKNFLFLRLWDRNMDIAMGWKGAQ--AMQFGQPLVFDMAYENYMKRKELQNTVSQL :. :.:.. . : : . : .. ... :..: .... : :.... .:. NP_001 EKRKRKKLERQCQMEPNSD-GHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKKLHKQI 70 80 90 100 110 120 230 240 250 260 270 280 pF1KE3 LESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHV-DLFPKDS . . ::: . : ..:. . : :.... . .. : . . : .:. :.. NP_001 QRCYAENRRALHPVQFYLTSH--GGQLKKNM-DENDKGWVNWKDIHIKPEHYSELIKKED 130 140 150 160 170 180 290 300 310 320 330 340 pF1KE3 IIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEI .::::.::::.. . ..:.::::..::.. . : . .:. .. ::: .... . NP_001 LIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMN- 190 200 210 220 230 240 350 360 370 380 390 400 pF1KE3 GNKNLTLDQMIRILLCLKNNGNWQEAL-QFVPKRKHTGFLEISQHSQEFINRLKKAKT . : :.......:.: .. .::::. ..:.:: NP_001 SRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEGG 250 260 270 280 290 300 NP_001 SDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 >>XP_005263409 (OMIM: 616013,616033) PREDICTED: tRNA met (339 aa) initn: 184 init1: 152 opt: 275 Z-score: 292.6 bits: 62.8 E(85289): 1.5e-09 Smith-Waterman score: 275; 25.3% identity (62.4% similar) in 245 aa overlap (140-380:38-276) 110 120 130 140 150 160 pF1KE3 EHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETT : ..: ::.:: .: :: .... . XP_005 AFIETSNVDKKQGINEDQEESQKPRLGEGCEPISK-RQMKKLIKQKQWEEQRELRKQKRK 10 20 30 40 50 60 170 180 190 200 210 220 pF1KE3 EEDKQKNFLFLRLWDRNMDIAMGWKGAQ--AMQFGQPLVFDMAYENYMKRKELQNTVSQL :. :.:.. . : : . : .. ... :..: .... : :.... .:. XP_005 EKRKRKKLERQCQMEPNSD-GHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKKLHKQI 70 80 90 100 110 120 230 240 250 260 270 280 pF1KE3 LESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHV-DLFPKDS . . ::: . : ..:. . : :.... . .. : . . : .:. :.. XP_005 QRCYAENRRALHPVQFYLTSH--GGQLKKNM-DENDKGWVNWKDIHIKPEHYSELIKKED 130 140 150 160 170 180 290 300 310 320 330 340 pF1KE3 IIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEI .::::.::::.. . ..:.::::..::.. . : . .:. .. ::: .... . XP_005 LIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMN- 190 200 210 220 230 240 350 360 370 380 390 400 pF1KE3 GNKNLTLDQMIRILLCLKNNGNWQEAL-QFVPKRKHTGFLEISQHSQEFINRLKKAKT . : :.......:.: .. .::::. ..:.:: XP_005 SRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEGG 250 260 270 280 290 300 XP_005 SDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 >>XP_006714480 (OMIM: 616013,616033) PREDICTED: tRNA met (339 aa) initn: 184 init1: 152 opt: 275 Z-score: 292.6 bits: 62.8 E(85289): 1.5e-09 Smith-Waterman score: 275; 25.3% identity (62.4% similar) in 245 aa overlap (140-380:38-276) 110 120 130 140 150 160 pF1KE3 EHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETT : ..: ::.:: .: :: .... . XP_006 AFIETSNVDKKQGINEDQEESQKPRLGEGCEPISK-RQMKKLIKQKQWEEQRELRKQKRK 10 20 30 40 50 60 170 180 190 200 210 220 pF1KE3 EEDKQKNFLFLRLWDRNMDIAMGWKGAQ--AMQFGQPLVFDMAYENYMKRKELQNTVSQL :. :.:.. . : : . : .. ... :..: .... : :.... .:. XP_006 EKRKRKKLERQCQMEPNSD-GHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKKLHKQI 70 80 90 100 110 120 230 240 250 260 270 280 pF1KE3 LESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHV-DLFPKDS . . ::: . : ..:. . : :.... . .. : . . : .:. :.. XP_006 QRCYAENRRALHPVQFYLTSH--GGQLKKNM-DENDKGWVNWKDIHIKPEHYSELIKKED 130 140 150 160 170 180 290 300 310 320 330 340 pF1KE3 IIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEI .::::.::::.. . ..:.::::..::.. . : . .:. .. ::: .... . XP_006 LIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMN- 190 200 210 220 230 240 350 360 370 380 390 400 pF1KE3 GNKNLTLDQMIRILLCLKNNGNWQEAL-QFVPKRKHTGFLEISQHSQEFINRLKKAKT . : :.......:.: .. .::::. ..:.:: XP_006 SRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEGG 250 260 270 280 290 300 XP_006 SDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 403 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:19:29 2016 done: Mon Nov 7 03:19:31 2016 Total Scan time: 8.650 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]