FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3055, 208 aa 1>>>pF1KE3055 208 - 208 aa - 208 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9850+/-0.000382; mu= 10.0815+/- 0.024 mean_var=78.1207+/-15.608, 0's: 0 Z-trim(112.8): 18 B-trim: 64 in 1/50 Lambda= 0.145108 statistics sampled from 21864 (21881) to 21864 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.257), width: 16 Scan time: 6.180 The best scores are: opt bits E(85289) NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 1352 292.4 3.4e-79 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 383 89.6 3.7e-18 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 380 88.9 5.6e-18 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 378 88.5 7.6e-18 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 376 88.1 1e-17 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 368 86.4 3.3e-17 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 361 85.0 8.9e-17 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 360 84.7 1e-16 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 357 84.1 1.6e-16 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 357 84.1 1.6e-16 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 355 83.7 2.1e-16 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 349 82.4 5.1e-16 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 345 81.6 9.1e-16 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 345 81.6 9.1e-16 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 342 81.0 1.4e-15 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 340 80.6 1.9e-15 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 162 43.3 0.00034 >>NP_795372 (OMIM: 615223) interferon epsilon precursor (208 aa) initn: 1352 init1: 1352 opt: 1352 Z-score: 1542.7 bits: 292.4 E(85289): 3.4e-79 Smith-Waterman score: 1352; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208) 10 20 30 40 50 60 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_795 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_795 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_795 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF 130 140 150 160 170 180 190 200 pF1KE3 SLTEKLSKQGRPLNDMKQELTTEFRSPR :::::::::::::::::::::::::::: NP_795 SLTEKLSKQGRPLNDMKQELTTEFRSPR 190 200 >>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs (189 aa) initn: 340 init1: 340 opt: 383 Z-score: 447.0 bits: 89.6 E(85289): 3.7e-18 Smith-Waterman score: 383; 37.4% identity (70.9% similar) in 182 aa overlap (10-189:10-188) 10 20 30 40 50 60 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF :::.:. . :: : .. . :...: :: ... .: ..:: :..: NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLD-NRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL .::. .. .:.::. ....:::..::::.:: .. : .:.:. .:: .:.:::. : NP_076 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 pF1KE3 EALMGLEAEKLSGT--LGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFF :: . .. :... : ...:.. : :: ::::: :: .. :: ::: .:..:: : : . NP_076 EACV-MQEERVGETPLMNADSI-LAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSL 120 130 140 150 160 170 180 190 200 pF1KE3 VFSLTEKLSKQGRPLNDMKQELTTEFRSPR .: :.: .. NP_076 STNLQERLRRKE 180 >>NP_002167 (OMIM: 147640) interferon beta precursor [Ho (187 aa) initn: 370 init1: 320 opt: 380 Z-score: 443.7 bits: 88.9 E(85289): 5.6e-18 Smith-Waterman score: 380; 37.2% identity (68.3% similar) in 183 aa overlap (1-183:1-182) 10 20 30 40 50 60 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF : : .. .:.: ::: .:.. .:. : ::. : . ::: .:. .. :: : :: NP_002 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNG-RLEYCLKDRMNF 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL .:.. . ::.:: . ..::::.::..:: . : ::.:. .:..: ....:...: NP_002 DIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF .... . :: . : :. :..: :. :: ::. ..:: :::.::.::: : ..:. NP_002 KTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFIN 120 130 140 150 160 170 190 200 pF1KE3 SLTEKLSKQGRPLNDMKQELTTEFRSPR :: NP_002 RLTGYLRN 180 >>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs (190 aa) initn: 340 init1: 340 opt: 378 Z-score: 441.3 bits: 88.5 E(85289): 7.6e-18 Smith-Waterman score: 378; 38.9% identity (73.9% similar) in 157 aa overlap (35-189:35-189) 10 20 30 40 50 60 pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ :...: :: ... .: ..:: :..: .:: NP_008 PFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFGFPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM . .. .:.::. ....:::..::::.:: .. : .:.:. .:: .:.:::. ::: . NP_008 EEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLEACV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLEAEKLSGT--LGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSL .. :... : ...:.. : :: ::::: :: .. :: ::: .:..:: : : . .: NP_008 -MQEERVGETPLMNADSI-LAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTNL 130 140 150 160 170 180 190 200 pF1KE3 TEKLSKQGRPLNDMKQELTTEFRSPR :.: .. NP_008 QERLRRKE 190 >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 347 init1: 347 opt: 376 Z-score: 439.1 bits: 88.1 E(85289): 1e-17 Smith-Waterman score: 376; 34.8% identity (67.9% similar) in 184 aa overlap (7-189:5-188) 10 20 30 40 50 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVN-QESLKLLNKLQTLSIQQCLPHRKN :. ...:.. . : .: . : ...: ...: :. ... .: .:: :.. NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHD 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 FLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEY : .::. .. .:.::......::::.:: :.:: .. : .:.:. ::: :.: ::.. NP_002 FEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMND 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFV ::: . :. : ... : :: ::.:: :: .. :: ::: .:..:: : : : NP_002 LEACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFS 120 130 140 150 160 170 180 190 200 pF1KE3 FSLTEKLSKQGRPLNDMKQELTTEFRSPR .: ..: .. NP_002 TNLQKRLRRKD 180 >>NP_002168 (OMIM: 147553) interferon omega-1 precursor (195 aa) initn: 389 init1: 344 opt: 368 Z-score: 429.9 bits: 86.4 E(85289): 3.3e-17 Smith-Waterman score: 368; 35.7% identity (69.2% similar) in 185 aa overlap (11-193:11-192) 10 20 30 40 50 60 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF ::. . . . :: : .. .....: ::.... .: :: :..: NP_002 MALLFPLLAALVMTSYSPVGSLGCDLPQ-NHGLLSRNTLVLLHQMRRISPFLCLKDRRDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL .::. .. .: ::.:....::::::::::::... : .:. . ... :::::..: NP_002 RFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHL 60 70 80 90 100 110 130 140 150 160 170 pF1KE3 EA-LMGLEAEKLS-GTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFF :. :. . .: : :...: : : . ::. :. ::... :: ::: .:..:: . ::. NP_002 ETCLLQVVGEGESAGAISSPALTL--RRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFL 120 130 140 150 160 170 180 190 200 pF1KE3 VFSLTEKLSKQGRPLNDMKQELTTEFRSPR .. :.: .. : : NP_002 STNMQERLRSKDRDLGSS 180 190 >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 365 init1: 350 opt: 361 Z-score: 422.1 bits: 85.0 E(85289): 8.9e-17 Smith-Waterman score: 361; 38.1% identity (69.7% similar) in 155 aa overlap (35-189:34-188) 10 20 30 40 50 60 pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ :...: ::... .: .:: :..: .:: NP_002 SFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFRIPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM . .. .:.::......::::.:: :.:: .. : .::.. ::: .:.:::. ::: . NP_002 EEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTE :. : ... : :. ::.:: :: .. :: ::: .:..:: : : : .: . NP_002 IQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTNLQK 130 140 150 160 170 180 190 200 pF1KE3 KLSKQGRPLNDMKQELTTEFRSPR .: .. NP_002 RLRRKD >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 364 init1: 349 opt: 360 Z-score: 421.0 bits: 84.7 E(85289): 1e-16 Smith-Waterman score: 360; 38.7% identity (67.7% similar) in 155 aa overlap (35-189:34-188) 10 20 30 40 50 60 pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ :...: :: .. .: .:: :..: ::: NP_067 SFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFGLPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM . .. .:.:: .....::::.:: :.:: .. : .::.. ::: .:.:::. ::: . NP_067 EEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLEACV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTE :. : ... : :. ::.:: :: .. :: ::: .:..:: : : : .: . NP_067 IQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQK 130 140 150 160 170 180 190 200 pF1KE3 KLSKQGRPLNDMKQELTTEFRSPR : .. NP_067 ILRRKD >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 330 init1: 314 opt: 357 Z-score: 417.6 bits: 84.1 E(85289): 1.6e-16 Smith-Waterman score: 357; 34.2% identity (64.7% similar) in 190 aa overlap (1-189:1-188) 10 20 30 40 50 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQV-NQESLKLLNKLQTLSIQQCLPHRKN : . . .::.: .: :: : : ... :...: .. .. .: .:: :.. NP_002 MALPFVLLMALVVLNCKSICSLGCDLP--QTHSLSNRRTLMIMAQMGRISPFSCLKDRHD 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 FLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEY : .::. .. .:.::......::::.:: :.:: .. : :.:. .:: .:.:::. NP_002 FGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLND 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFV ::: : :. . : . . : :. ::.:: :: .. :: ::: .:..:: : . . NP_002 LEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLS 120 130 140 150 160 170 180 190 200 pF1KE3 FSLTEKLSKQGRPLNDMKQELTTEFRSPR .: :.: .. NP_002 ANLQERLRRKE 180 >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 361 init1: 346 opt: 357 Z-score: 417.6 bits: 84.1 E(85289): 1.6e-16 Smith-Waterman score: 357; 37.4% identity (69.0% similar) in 155 aa overlap (35-189:34-188) 10 20 30 40 50 60 pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ :...: :: .. .: .:: :..: .:. NP_066 SFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFGFPE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM . .. .:.::......::::.:: :.:: .. : .::.. ::: .:.:::. ::: . NP_066 EEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTE :. : ... : :. ::.:: :: .. :: ::: .:..:: : : : .: . NP_066 IQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQK 130 140 150 160 170 180 190 200 pF1KE3 KLSKQGRPLNDMKQELTTEFRSPR .: .. NP_066 RLRRKD 208 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:21:19 2016 done: Mon Nov 7 03:21:20 2016 Total Scan time: 6.180 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]